Man pages for erikjskie/ensemblemerge
Integrates existing sc-RNAseq integration methods into a single package
| BaseMerge-class | BaseMerge |
| BasePreprocess-class | The BasePreprocess class |
| BBKNNMerge-class | The BBKNNMerge class |
| ensemble | The generic function of ensemble |
| EnsembleMerge-class | The EnsembleMerge class |
| ensemble-Seurat-EnsembleMerge-method | Merge Seurat objects by the EnsembleMerge method |
| FastMNNMerge-class | The FastMNNMerge class |
| HarmonyMerge-class | The HarmonyMerge class |
| LigerMerge-class | The LigerMerge class |
| Merge | The generic function of Merge |
| Merge-Seurat-BBKNNMerge-method | Merge Seurat objects |
| Merge-Seurat-FastMNNMerge-method | Merge Seurat objects |
| Merge-Seurat-HarmonyMerge-method | Merge Seurat objects |
| Merge-Seurat-LigerMerge-method | Merge Seurat objects |
| Merge-SeuratList-SeuratMerge-method | Merge Seurat objects |
| Merge-Seurat-Params-method | Merge Seurat objects |
| Merge-Seurat-ScanoramaMerge-method | Merge Seurat objects |
| Merge-Seurat-scVIMerge-method | Merge Seurat objects |
| Merge-Seurat-SeuratMerge-method | Merge Seurat objects |
| Merge-Seurat-UncorrectedMerge-method | Merge Seurat objects |
| Merge-SummarizedExperiment-BaseMerge-method | Merge SummarizedExperiment objects |
| Merge-SummarizedExperiment-Params-method | Merge SummarizedExperiment objects |
| MethodList-class | The MethodList class |
| pbmc | 293t_Jurkat cell lineage dataset with one batch with... |
| Preprocess | The generic function of Preprocess |
| Preprocess-Seurat-SeuratPreprocess-BaseMerge-method | Preprocess a Seurat objects by the Seurat pipeline |
| PythonPackage-class | PythonPackage |
| RPackage-class | RPackage |
| run_BBKNN | Run BBKNN integration |
| run_fastMNN | Run fastMNN merging |
| run_Harmony | Run Harmony functions |
| run_Liger | Run Liger merging |
| run_Scanorama | Run Scanorama integration |
| run_scVI | Run scVI functions |
| run_Seurat | Run Seurat functions |
| run_Uncorrected | Run uncorrected merging |
| ScanoramaMerge-class | The ScanoramaMerge class |
| ScanpyPreprocess-class | ScanpyPreprocess |
| scVIMerge-class | The scVIMerge class |
| setParams | Set parameters for integration |
| SeuratList-class | The SeuratList class |
| SeuratMerge-class | SeuratMerge |
| SeuratPreprocess-class | The SeuratPreprocess class |
| show-BaseMerge-method | Print class BaseMerge |
| show-BasePreprocess-method | Print class BasePreprocess |
| show-BBKNNMerge-method | Print class BBKNNMerge |
| show-EnsembleMerge-method | Print class EnsembleMerge |
| show-FastMNNMerge-method | Print class FastMNNMerge |
| show-HarmonyMerge-method | Print class HarmonyMerge |
| show-LigerMerge-method | Print class LigerMerge |
| show-Params-method | Print class Seurat |
| show-SeuratMerge-method | Print class SeuratMerge |
| show-SeuratPreprocess-method | Print class SeuratPreprocess |
| UncorrectedMerge-class | The UncorrectedMerge class |
| valid | The generic function of valid |
| valid-Seurat-BaseMerge-method | Validate a Seurat object before merging |
| valid-Seurat-BasePreprocess-method | Validate a Seurat object before preprocessing |
| valid-Seurat-EnsembleMerge-method | Validate a Seurat object before ensembling |
