plot.fbroc.paired.roc: Plots a 'fbroc.paired.roc' object

In erikpeter/fbroc: Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves

Description

Plots a fbroc.paired.roc object and shows the two paired ROC curves. The confidence regions for the ROC curves and the performance estimates and confidence bounds for a specified metric can also be included in the plot.

Usage

## S3 method for class 'fbroc.paired.roc'
plot(x, col1 = "blue", fill1 = "dodgerblue",
  col2 = "darkgreen", fill2 = "seagreen1", print.plot = TRUE,
  show.conf = TRUE, conf.level = 0.95, steps = 250,
  show.metric = NULL, show.area = !show.conf, text.size.perf = 6,
  ...)

Arguments

x	An object of class fbroc.paired.roc.
col1	Color in which the ROC curve of the first classifier is drawn.
fill1	Color used for areas (confidence regions, AUCs and partial AUCs) belonging to the first ROC curve.
col2	Color in which the ROC curve of the second classifier is drawn.
fill2	Color used for areas (confidence regions, AUCs and partial AUCs) belonging to the second ROC curve.
print.plot	Logical specifying whether the plot should be printed.
show.conf	Logical specifying whether the confidence region should be plotted.
conf.level	Confidence level of the confidence region.
steps	Number of discrete steps for the FPR at which the TPR is calculated. TPR confidence intervals are given for all FPRs in seq(0, 1, by = (1 / steps)). Defaults to 250.
show.metric	Character specifying which metric to display. See perf.fbroc.roc for details. Defaults to NULL, which means that no metric is displayed.
show.area	Whether to shade the AUC or partial AUC area. Defaults to !show.conf.
text.size.perf	Size of the text display when show.metric is set to TRUE. Defaults to 6.
...	further arguments passed to perf.fbroc.paired.roc.

Value

A ggplot, so that the user can customize the plot further.

See Also

boot.paired.roc

Examples

data(roc.examples)
example <- boot.paired.roc(roc.examples$Cont.Pred, roc.examples$Cont.Pred.Outlier,
                           roc.examples$True.Class, n.boot = 100)
plot(example) # standard plot, no metric shown
plot(example, show.metric = "auc") # Include information about the AUC
plot(example, show.metric = "auc", show.conf = FALSE) # Show area instead
# Highlight TPR at an FPR of 20% 
plot(example, show.metric = "tpr", fpr = 0.2)    
plot(example, show.metric = "partial.auc", fpr = c(0.2, 0.4), 
     show.conf = FALSE, show.partial.auc.warning = FALSE) # Show area                  

erikpeter/fbroc documentation built on May 16, 2019, 8:42 a.m.