This function rotates the somites so they are aligned correctly. This is important for labelling the cells with the somite identity later
1 | rotate.somites(somiteDF, bros, side)
|
somiteDF |
Dataframe containing the boundary information. must include the following column names: Embryo, X, Y, boundary. Embryo is the number of the embryo, Boundary is the somite boundary, must be in the form 0-1, 1-2, etc where the numbers represent the somites that are being bound (ie 0-1 is the boundary between somite 0 and somite 1) ALSO MUST INCLUDE minimally boundary 0-1 and 5-6! |
bros |
number of embryos in the dataframe |
side |
dataframe consisting of the number of the embryo, the side (L vs R) and a multiplier (-1 or 1) based on if the embryo is on the L or R side |
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