herring_main_baseline_assess_func: main wrapper function that does all the steps for assessing...

Description Usage Arguments

Description

main wrapper function that does all the steps for assessing the baseline

Usage

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herring_main_baseline_assess_func(baseline_path, lat_long_path, rep_unit_path,
  locus_columns)

Arguments

baseline_path

Path to a baseline file that is in the (csv) format that Dan H uses. See alewife-baseline.csv for an example. Importantly, the file must have a column called Drainage.code that has the drainage codes as in DH's file.

lat_long_path

Path to a text file with lats and longs of the pops in the baseline file. See file alewife-lat-long.txt for an example.

locus_columns

integer vector with the columns in the original CSV file that have the loci that you want to use. Should be twice as many columns as loci. In alewife-baseline.csv this is


eriqande/herring documentation built on May 16, 2019, 8:47 a.m.