main wrapper function that does all the steps for assessing the baseline
1 2 | herring_main_baseline_assess_func(baseline_path, lat_long_path, rep_unit_path,
locus_columns)
|
baseline_path |
Path to a baseline file that is in the (csv) format that Dan H uses. See alewife-baseline.csv for an example. Importantly, the file must have a column called Drainage.code that has the drainage codes as in DH's file. |
lat_long_path |
Path to a text file with lats and longs of the pops in the baseline file. See file alewife-lat-long.txt for an example. |
locus_columns |
integer vector with the columns in the original CSV file that have the loci that you want to use. Should be twice as many columns as loci. In alewife-baseline.csv this is |
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