Files in eriqande/lowergranite
assessing variability of abundances of salmon in different strata
.gitignore
AuxiliaryMaterial/PooledBSvsCFAge.r
AuxiliaryMaterial/README.md
AuxiliaryMaterial/SimOutBias.xlsx
AuxiliaryMaterial/SimOutCoverage.xlsx
AuxiliaryMaterial/SimulationInputs.tex
AuxiliaryMaterial/Weighted_BSvsCFAge.r
CallingPgm.R
DESCRIPTION
NAMESPACE
R/compile_output.R
R/convenience_functions.R
R/data.R
R/gsi-sim-r-stuff.R
R/lower-granite-gsi-funcs.R
R/run_boot_gsi_analysis.R
README.md
TERMS.md
TODO
TODO.md
data/chinook_run_settings.rda
data/lg_test_data.rda
data/steelhead_run_settings.rda
inst/analyses/parallel_do_analyses.R
inst/bin/gsi_sim
inst/bin/gsi_sim.exe
inst/data_files/CH11SIMPOP.xlsx
inst/data_files/CH11SIMPOP_StockAge.xlsx
inst/data_files/CH11SIMPOP_StockSex.xlsx
inst/data_files/SH11SIMPOP.xlsx
inst/data_files/SH11SIMPOP_StockAge.xlsx
inst/data_files/SH11SIMPOP_StockSex.xlsx
inst/data_files/SH11SIMPOPstock.xlsx
inst/data_files/chnk_base_v3_180.txt
inst/data_files/chnk_base_v3_repunits.txt
inst/data_files/data_for_testing/README
inst/data_files/data_for_testing/SH11SIMPOPstock.xlsx
inst/data_files/data_for_testing/sthd_base_v3_187.txt
inst/data_files/data_for_testing/sthd_base_v3_rg.txt
inst/data_files/data_for_testing/sthd_super_informo_baseline.txt
inst/data_files/sthd_base_v3_187.txt
inst/data_files/sthd_base_v3_rg.txt
inst/manuscript/April72014.docx
inst/manuscript/CJFASfiles/.gitignore
inst/manuscript/CJFASfiles/Figure1.eps
inst/manuscript/CJFASfiles/RRrefs.bib
inst/manuscript/CJFASfiles/RunCompCJFAS.tex
inst/manuscript/CJFASfiles/SimulationInputs.pdf
inst/manuscript/CJFASfiles/SupplementalTables.docx
inst/manuscript/CJFASfiles/lineno.sty
inst/manuscript/CJFASfiles/natbib.sty
inst/manuscript/CJFASfiles/plainnat.bst
inst/manuscript/CJFASfiles/setspace.sty
inst/manuscript/CJFASfiles/url.sty
inst/manuscript/CincoDeMayo2014.docx
inst/manuscript/CincoDeMayo2014_MA.docx
inst/manuscript/KirksDraftJuly192014.docx
inst/manuscript/SH2011data/sy2011sthdFishData.csv
inst/manuscript/SH2011data/sy2011sthdWindowCounts.csv
inst/manuscript/SimulationInputs/.gitignore
inst/manuscript/SimulationInputs/SimulationInputs.pdf
inst/manuscript/SimulationInputs/SimulationInputs.tex
inst/manuscript/SimulationResults/SimResults.tex
inst/manuscript/figures/Fig1 SH_Stock.bmp
inst/manuscript/figures/Fig2 SH_StockSex.bmp
inst/manuscript/figures/Fig3 SH_StockAge.bmp
inst/manuscript/figures/Fig4 CH_Stock.bmp
inst/manuscript/figures/Fig5 CH_StockSex.bmp
inst/manuscript/figures/Fig6 CH_StockAge.bmp
inst/manuscript/figures/Thumbs.db
inst/manuscript/~$ncoDeMayo2014.docx
inst/manuscript/~$ncoDeMayo2014_MA.docx
inst/manuscript/~WRL0151.tmp
inst/manuscript/~WRL4078.tmp
inst/tests/test_eric.R
lowergranite.Rproj
man/check_subgroup_level_completeness.Rd
man/chinook_run_settings.Rd
man/do_chinook.Rd
man/do_steelhead.Rd
man/extract_multi_fix_sim_to_df.Rd
man/get_pop_for_rg.Rd
man/gsi_ize_the_Sim.List.Rd
man/gsi_simBinaryPath.Rd
man/gsisim2PopsList.Rd
man/gsisimRepUnits2List.Rd
man/lg_test_data.Rd
man/make_super_informo_data.Rd
man/quoteProtect.Rd
man/run_boot_gsi_analysis.Rd
man/slurp_all_results.Rd
man/steelhead_run_settings.Rd
tests/run-all.R
vignettes/dev-notes.Rmd
