lg_test_data: A variety of data that is useful for testing functions in the...

In eriqande/lowergranite: assessing variability of abundances of salmon in different strata

Description

This is a list that holds a variety of quantities that are useful to have to carry out tests of the functions in the package. Mostly they were created from the steelhead data.

Usage

data(lg_test_data)

Format

This is a list with the following components:

RU.list

An example reporting unit list.

Originnames

An example of an Originnames character vector.

big.gsi.out

Example gsi_sim standard output (with –multi-fix-mix output) in a character vector.

multi_fix_df_compare

Data frame: correct output of extract_multi_fix_sim_to_df when run with the test data above. Allows comparison in tests. This data frame was created with expect_that(extract_multi_fix_sim_to_df(lg_test_data$gsi.big.out, lg_test_data$RU.list, lg_test_data$Originnames)

known_stock_result15

output from run_boot_gsi_analysis.R that should look like some test results.

gsi_stock_result15

output from run_boot_gsi_analysis.R that should look like some test results.

SH11.Stock.Age.With.Periods

A data frame of the 2011 steelhead proportions broken out by stock and brood year with names formatted the way we need them for theses analyses. i.e., like GRROND..BY07 GRROND..BY08 LSNAKE..BY04, etc

Sim.List.Vanilla

This holds the result of the Sim.List variable when running run_boot_gsi_analysis on the simple SH11 data set that is listed in the example: i.e. the standard known_stock_result1 <- run_boot_gsi_analysis(stock_group_start_col = 14, nsim = 10, B = 50, DO_GSI_ON_PROP = F)

Sim.List.SH.Stock.Age

This holds the Sim.List with nsim=2 running run_boot_gsi_analysis with W=SH11.Stock.Age.With.Periods. This is primarily used to be able to feed it into gsi_ize_the_Sim.List to make sure that function is dealing with the two-period group names like GRROND..BY07.

sh.droppers

A character vector of names that we might wish to drop from SH11.Stock.Age.With.Periods while running the analysis.

eriqande/lowergranite documentation built on May 16, 2019, 8:47 a.m.