Man pages for eriqande/microhaplotopia
Tools for Working with Microhaplot Data a la the SWFSC
| calculate_missing_data | Calculate number of loci with and without missing data. |
| filter_bad_loci | Remove loci from data frame |
| filter_missing_data | Remove samples with too much missing data |
| filter_raw_microhap_data | Filter raw microhaplot output from... |
| find_contaminated_samples | Find potentially contaminated samples |
| find_duplicates | Identify duplicate samples |
| find_missing_samples | Determine which samples did not pass filtering criteria |
| mhap_transform | Transform long genos to different formats for downstream... |
| plot_run_statistics | Summarize data grouped by sequencing run. |
| read_samplesheets | Read sample sheet information from Illumina sequencing run(s) |
| read_unfiltered_observed | Read unfiltered observed microhaplot output from a directory... |
| resolve_duplicate_samples | Resolves duplicate samples |
| summarize_data | Summarize long genotype data. |
