resolve_duplicate_samples: Resolves duplicate samples
In eriqande/microhaplotopia: Tools for Working with Microhaplot Data a la the SWFSC
View source: R/resolve_duplicate_samples.R
Description
If a sample was sequenced on multiple sequencing runs (i.e.
it's present with multiple 'source' variables) this function
identifies the sequencing run with more missing data and removes
that sample-by-source combination. This function does not test
if the duplicates are genotypically identical.If you want to
confirm that they are truly duplicates with identical
genotype data go have a crack at 'CKMRsim::find_close_matching_genotypes'.
Usage
1
resolve_duplicate_samples(long_genos)
Arguments
long_genos
genetic data in long format where each sample
has 2 rows per locus. This dataframe could be the output from
'filter_raw_microhap_data'
eriqande/microhaplotopia documentation built on July 7, 2020, 1:16 a.m.
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View source: R/resolve_duplicate_samples.R
Description
If a sample was sequenced on multiple sequencing runs (i.e. it's present with multiple 'source' variables) this function identifies the sequencing run with more missing data and removes that sample-by-source combination. This function does not test if the duplicates are genotypically identical.If you want to confirm that they are truly duplicates with identical genotype data go have a crack at 'CKMRsim::find_close_matching_genotypes'.
Usage
1 | resolve_duplicate_samples(long_genos)
|
Arguments
long_genos |
genetic data in long format where each sample has 2 rows per locus. This dataframe could be the output from 'filter_raw_microhap_data' |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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