find_contaminated_samples: Find potentially contaminated samples
In eriqande/microhaplotopia: Tools for Working with Microhaplot Data a la the SWFSC
View source: R/find_contaminated_samples.R
Description
This function identifies samples that have more than 2 haplotypes per locus
that pass filtering on haplotype depth, total depth and allele balance.
Usage
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find_contaminated_samples(
raw_data,
haplotype_depth,
total_depth,
allele_balance
)
Arguments
raw_data
The raw data from a single, or multiple sequencing runs. This could be the output from
read_unfiltered_observed()
eriqande/microhaplotopia documentation built on July 7, 2020, 1:16 a.m.
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View source: R/find_contaminated_samples.R
Description
This function identifies samples that have more than 2 haplotypes per locus that pass filtering on haplotype depth, total depth and allele balance.
Usage
1 2 3 4 5 6 | find_contaminated_samples(
raw_data,
haplotype_depth,
total_depth,
allele_balance
)
|
Arguments
raw_data |
The raw data from a single, or multiple sequencing runs. This could be the output from read_unfiltered_observed() |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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