pmdSamp: Function for resampling and calculating standard deviation,...

In eritema/inseqDiv: Diversity analysis of Viral Insertion site in Gene Therapy

Description

The function can calculate the stablity of PMD index by calculating standard deviation by resamping the insertion site data.

Usage

pmdSamp(x, ntime, frac)

Arguments

x	Insertion Sequence data matrix
ntime	number of times we want resampling e.g 1000
frac	fraction of sample we want resample e.g 0.75

Details

In order to calculate the standard deviation of PMD index, performed analysis by resampling Insertion site data. Resulting out put is in the form of matrix which contain Richness, Evenness and PMD index values and their respective standard deviation for defined fraction of sampling, n times of sampling. These informtions are calculated for every sample of matrix.

Author(s)

shahzad

Examples

data(insertionSeq)
resultMat<-pmdSamp(insertionSeq,100,0.75)

eritema/inseqDiv documentation built on May 16, 2019, 8:48 a.m.