pmdscatterplot: Function for ploting results of function pmd() in scatter...

In eritema/inseqDiv: Diversity analysis of Viral Insertion site in Gene Therapy

Description

Provides a scatter plot on the clonal plane for the samples analyzed via pmd(). It plots the Richness on x axis and Evenness component on Y axix. Each dot on plot represent a experimental sample and can be labelled with its name. Color of plot is given according to the value of PMD index. Red color indicated sample being more monoclonal and blue being more polyclonal.

Usage

pmdscatterplot(pmdres, nameofplot="",labelling=T,labelsize=3,spotRadius=7)

Arguments

pmdres	is the Matrix provided by function pmd()
nameofplot	title of the plot
labelling	flag that controls the presence/absence of sample labels in the plot
labelsize	dimension of the labels
spotRadius	dimension of the data spot

Details

Provide a scatter plot for the pmd function results.

Author(s)

Shahzad Ahmad

Examples

data(insertionSeq)
pmdRes<-pmd(insertionSeq)
pmdscatterplot(pmdRes,"test Data 1")

eritema/inseqDiv documentation built on May 16, 2019, 8:48 a.m.