alphawichVis: Visualization of Alpha Diversity Indexes

In escamero/mirlyn: Multiple Iterations of Rarefying for Library Normalization

Visualization of Alpha Diversity Indexes

Description

alphawichVis() will visualize the diversity index values generated from alphadivDF().

Usage

alphawichVis(
  alphawichDF,
  xvar = "Sample",
  yvar = "DiversityIndex",
  colorvar = NULL
)

Arguments

alphawichDF	The alphawichDF object.
xvar	The xvar column name. Users must specify the metadata column to be plotted on the x-axis.
yvar	The yvar column name. By default, the diversity index value will be plotted.
colorvar	The metadata column name that will be used for colour assignment.

Value

A ggplot object.

Examples

# This is one way of using it.
library(mirlyn)
data(example)

## Not run: 
example <- mirl(example, rep = 100)
example <- alphadivDF(example)
alphawichVis(example, "Id")

## End(Not run)

escamero/mirlyn documentation built on Aug. 6, 2023, 9:30 p.m.