phyloseq_to_df: Conversion of 'phyloseq' Object to 'data.frame'
In escamero/mirlyn: Multiple Iterations of Rarefying for Library Normalization
phyloseq_to_df R Documentation
Conversion of phyloseq Object to data.frame
Description
phyloseq_to_df() will create a dataframe including OTU abundances, taxonomic
classification and metadata extracted from the phyloseq object.
This dataframe can be exported as a CSV file for easy viewing.
Usage
phyloseq_to_df(x)
Arguments
x
The phyloseq object.
Value
A data.frame object.
#' @examples
library(mirlyn)
data(example)
example_df <- phyloseq_to_df(example)
escamero/mirlyn documentation built on Aug. 6, 2023, 9:30 p.m.
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| phyloseq_to_df | R Documentation |
Conversion of phyloseq Object to data.frame
Description
phyloseq_to_df() will create a dataframe including OTU abundances, taxonomic
classification and metadata extracted from the phyloseq object.
This dataframe can be exported as a CSV file for easy viewing.
Usage
phyloseq_to_df(x)
Arguments
x |
The |
Value
A data.frame object.
#' @examples library(mirlyn) data(example) example_df <- phyloseq_to_df(example)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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