API for esnapd/DegeneratePrimerTools
Tools for Designing Degenerate Primers

Global functions
add_primerpair Source code
add_primerpairs_to_MSA Source code
add_primers_to_MSA Source code
autofind_primers Source code
build_tree Source code
calculate_rarefaction_curves Source code
combine_domains Source code
degePrime Source code
degeprimer Source code
design_primers Source code
does_primer_match Source code
draw_geomap_results Source code
draw_plate_results Source code
extract_ends Source code
extract_sequences Source code
find_primers Source code
get.component.classes Source code
get_GC Source code
is.component.class Source code
load_blast Source code
load_hmmmerdomtbl Source code
makedegenerate Source code
makedegenerateseqs Source code
plot_GC Source code
plot_coveragematrix Source code
plot_degeprimer Source code
plot_msa Source code
primer_analysis Source code
primer_filtering Source code
query_SeqData Source code
rc Source code
retrieve_EMBL_sequences Source code
retrieve_EMBL_to_UNIPROT Source code
retrieve_PFAM_ids Source code
retrieve_PFAM_nucleotide_sequences Source code
retrieve_UNIPROT_to_EMBL Source code
run_alignment Source code
run_blast Source code
run_fasttree Source code
run_hmmer Source code
run_muscle Source code
run_vsearch_cluster Source code
run_vsearch_derep Source code
run_vsearch_global Source code
run_vsearch_sort Source code
splat.degeprimer.objects Source code
split_fna_tree Source code
trimAlignment Source code
trimMSA Source code
esnapd/DegeneratePrimerTools documentation built on June 8, 2017, 2:12 p.m.