Files in esnapd/DegeneratePrimerTools
Tools for Designing Degenerate Primers

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/IO.R R/add_primerpair.R R/add_primerpairs_to_MSA.R R/add_primers_to_MSA.R R/allClasses.R R/allData.R R/autofind_primers.R R/build_tree.R R/calculate_rarefaction.R R/choose_primer.R R/commandline-functions.R R/degeprimer-class.R R/design_primers.R R/draw_geomap_results.R R/draw_plate_results.R R/extract_amplicons.R R/extract_ends.R R/make_primer_table.R R/plot_GC.R R/plot_coveragematrix.R R/plot_degeprimer.R R/plot_msa.R R/primer-validation-functions.R R/primer_design.R R/primerdata-class.R R/query_seqData.R R/retrieval-functions.R R/run_alignment.R R/run_blast.R R/run_fasttree.R R/run_hmmer.R R/run_muscle.R R/run_vsearch_cluster.R R/run_vsearch_derep.R R/run_vsearch_global.R R/run_vsearch_sort.R R/split_fna_tree.R R/utility-functions.R Readme.Rmd
data-raw/Makefile
data-raw/makeAHBAdata.R data-raw/makeprimertables.R
data-raw/makeprimertables.py
data/AHBA_degeprimer.rda
data/degenS.rda
data/degenSZ.rda
data/degenZ.rda
data/illumina_p7.rda
inst/DEGEPRIME/DegePrime.pl
inst/DEGEPRIME/LICENSE.txt
inst/DEGEPRIME/TrimAlignment.pl
inst/Degen/Degen_v1_4.pl
inst/Degen/README.txt
inst/sequences/AHBA.fna
shiny/app.R tests/testthat.R tests/testthat/test_DegeneracyCodonTables.R tests/testthat/test_extract_ends.R tests/testthat/test_plotting_functions.R tests/testthat/test_processing_functions.R tests/testthat/test_retrieval_functions.R vignettes/Design_Primers_with_Shiny.Rmd vignettes/degenerateprimertools-basics.Rmd
vignettes/images/choose_primers.png
esnapd/DegeneratePrimerTools documentation built on Sept. 25, 2017, 11:59 a.m.