Man pages for estepi/ASpli
Analysis of alternative splicing using RNA-Seq
| acc_AS | Accessors for ASpliAS object |
| acc_counts | Accessors for ASpliCounts object |
| acc_DU | Accessors for ASpliDU object |
| acc_features | Accessors for ASpliFeatures object |
| AsDiscover-methods | Report PSI and PIR using experimental junctions |
| ASpliAS-class | Class '"ASpliAS"' |
| ASpliCounts | Class '"ASpliCounts"' |
| ASpliCounts-class | Class '"ASpliCounts"' |
| ASpliDU-class | Class '"ASpliDU"' |
| ASpliFeatures-class | Class '"ASpliFeatures"' |
| ASpli-package | Analysis of alternative splicing using RNAseq |
| binGenome | Feature coordinates extraction |
| binGenome-methods | Feature coordinates extraction |
| DUreport | Differential gene expression and differential bin/junction... |
| DUreport_DEXSeq | Differential gene expression and differential bin/junction... |
| loadBAM | Load BAM files |
| plotTopTags | Coverage plots |
| rds | Divides read counts by gene and bin length |
| readCounts | Summarize read overlaps |
| show-methods | Display a summary of data contained in ASpliObjects |
| write | Write results |
| write-methods | Write results |
