ASpliAS-class: Class '"ASpliAS"'
In estepi/ASpli: Analysis of alternative splicing using RNA-Seq

Results of PSI and PIR using experimental junctions

irPIR:: Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
altPSI:: Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
esPSI:: Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
join:: It is a combination of irPIR, altPSI and esPSI tables
junctionsPIR:: PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events
junctionsPSI:: Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Using strand information it is possible to classify those pair of junctions into Alt5'ss, Alt3'ss or ES. Ratio between them along samples is reported.