mob: Mouse Olfactory Bulb (MOB) Dataset

In estfernan/boost: Bayesian Modeling of Spatial Transcriptomics Data

Mouse Olfactory Bulb (MOB) Dataset

Description

The mouse olfactory bulb (MOB) study is a publicly available ST dataset accessible on the Spatial Research Lab http://www.spatialresearch.org. There are twelve replicates in the MOB study. Following the previous studies (Li et al., 2020; Sun et al., 2020; Svensson et al., 2018), the MOB replicate eleven, which contains 16,218 genes measured on 262 spots, was saved.

Format

mob is a matrix with 262 spots and 16,218 genes that denotes the expression count table. mob.spots is a matrix of the geospatial profile.

Source

Publicly available at http://www.spatialresearch.org.

References

Li, Q., M. Zhang, Y. Xie, and G. Xiao (2020). Bayesian modeling of spatial molecular profiling data via Gaussian process. arXiv preprint arXiv:2012.03326.

Sun, S., J. Zhu, and X. Zhou (2020). Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies. Nature Methods 17 (2), 193–200.

Svensson, V., S. A. Teichmann, and O. Stegle (2018). SpatialDE: Identification of spatially variable genes. Nature Methods 15 (5), 343–346.

Examples

## mouse olfactory bulb (MOB) dataset
data(mob)

estfernan/boost documentation built on June 24, 2022, 12:20 a.m.