API for etaijacob/CMA
An R package for correlated mutation analysis using both codon and amino acid levels
| Global functions | |
|---|---|
| AccPi_true | Source code |
| AccPij_true | Source code |
| CMA | Man page |
| CMA_aa | Man page Source code |
| CMA_aa_codon | Man page Source code |
| CMA_codon | Man page Source code |
| Compute_C | Source code |
| Compute_Results | Source code |
| Compute_True_Frequencies | Source code |
| ReturnW | Source code |
| aa_letter_to_binary_vec | Source code |
| aa_msa_to_binary_matrix | Source code |
| aa_seq_to_binary_vec | Source code |
| arrayC | Source code |
| bp_link | Source code |
| calc_APC | Source code |
| calc_MIp | Source code |
| calculate_mi_and_omes | Source code |
| codon_letter_to_binary_vec | Source code |
| codon_msa_to_binary_matrix | Source code |
| codon_seq_to_binary_vec | Source code |
| compute_di | Source code |
| compute_mu | Source code |
| dca | Man page Source code |
| getExcludedIndices.fasta | Source code |
| getExcludedIndices.sth | Source code |
| hammingdist | Source code |
| mapkey | Source code |
| read_stockholm_alignment | Man page Source code |
| return_alignment | Source code |
| sampledHammingdist | Source code |
| with_pc | Source code |
