API for etaijacob/CMA
An R package for correlated mutation analysis at both codon and amino acid levels.

Global functions
AccPi_true Source code
AccPij_true Source code
CMA Man page
CMA-package Man page
Compute_C Source code
Compute_Results Source code
Compute_True_Frequencies Source code
ReturnW Source code
aaDCA.fasta Source code
aaDCA.sth Source code
aa_letter_to_binary_vec Source code
aa_msa_to_binary_matrix Source code
aa_seq_to_binary_vec Source code
aacodonDCA Source code
arrayC Source code
bp_link Source code
calc_APC Source code
calc_MIp Source code
calculate_mi_and_omes Source code
codonDCA.fasta Source code
codonDCA.sth Source code
codon_letter_to_binary_vec Source code
codon_msa_to_binary_matrix Source code
codon_seq_to_binary_vec Source code
compute_di Source code
compute_mu Source code
dca Man page Source code
getExcludedIndices.fasta Source code
getExcludedIndices.sth Source code
hammingdist Source code
mapkey Source code
read.stockholm.alignment Source code
return_alignment Source code
sampledHammingdist Source code
with_pc Source code
etaijacob/CMA documentation built on May 13, 2017, 8:26 p.m.