solveCoral: Solve coral-_Symbiodinium_ ODEs Function solveCoral uses the...

In ethanbaxterUCSB/coRalODEs: Solve coRal with ODEs

Description

Solve coral-Symbiodinium ODEs Function solveCoral uses the deSolve package to generate values similar to run_coral from the coRal package.

Usage

solveCoral(
  times = c(0, 500),
  pars = defPars(),
  lambda = 5,
  method = "vode",
  func = coralODEs,
  init = initState,
  ...
)

Arguments

times	The time values at which output is desired. Default c(0,500).
pars	The paramaters of the model, given as a list. See function defPars. Default defPars().
lambda	The sensitivity of the runs. High values are more sensitive and small values are less sensitive. Default 5.
method	The character method argument of ode() from deSolve desired. Default "vode".
func	The function to find the rates of change of the state variables. Default coralODEs.
...	Any other arguments to be passed to ode().

Value

Matrix of values for fluxes, biomass, and host growth rate at explicitly desired time values.

See Also

defPars, initState, coralODEs, coralODEs.noROS

Examples

solveCoral()
solveCoral(times = seq(0,365,0.1), pars = defPars(), lambda = 10,atol = 0.01,
	rtol = 0.01)

ethanbaxterUCSB/coRalODEs documentation built on Jan. 28, 2022, 12:43 a.m.