solveCoral: Solve coral-_Symbiodinium_ ODEs

In ethanbaxterUCSB/coralSymbiontODEs: Solve Coral-Symbiodinium ODE System

Description

Function solveCoral uses the deSolve package to generate values similar to coRal (Cunning). Is essentially a transcription of Ferdinand Pfab's Mathematica code to R.

Usage

solveCoral(
  times = c(0, 500),
  pars = defPars(),
  lambda = 5,
  method = "vode",
  ...
)

Arguments

times	The time values at which output is desired. Default c(0,500).
pars	The paramaters of the model, given as a list. See function defPars. Default defPars().
lambda	The sensitivity of the runs. High values are more sensitive and small values are less sensitive. Default 5.
method	The character method argument of ode() from deSolve desired. Default "vode".
...	Any other arguments to be passed to ode().

Value

Matrix of values for fluxes, biomass, and host growth rate at explicitly desired time values.

See Also

defPars, initState

Examples

solveCoral()
solveCoral(times = seq(0,365,0.1), pars = defPars(), lambda = 10, atol = 0.01, rtol = 0.01)

ethanbaxterUCSB/coralSymbiontODEs documentation built on Dec. 8, 2020, 9:42 a.m.