gi2rank: gi2rank
In etheleon/metamaps: MetamapsDB: R package for querying Metagenomics data against Metabolic Pathways and Gene Centric Assemblies
Description
Parse tabular blast format of contigs from DIAMOND for their respective genusIDs
Usage
1
gi2rank(blastTab, koi, sqlite3 = "sql3db")
Arguments
blastTab
the tabular output file from DIAMOND
koi
the KOs of interested eg K00001
sqlite3
the sqlite3 db
etheleon/metamaps documentation built on May 16, 2019, 9:05 a.m.
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Description
Parse tabular blast format of contigs from DIAMOND for their respective genusIDs
Usage
1 | gi2rank(blastTab, koi, sqlite3 = "sql3db")
|
Arguments
blastTab |
the tabular output file from DIAMOND |
koi |
the KOs of interested eg K00001 |
sqlite3 |
the sqlite3 db |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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