CyTOFPip: Run a post-quantification 10X technology-format CyTOF...
In eudoraleer/Ursa: An Automated Multi-omics Package for Single-cell Analysis

CyTOFPip

R Documentation

Run a post-quantification 10X technology-format CyTOF pipeline

This function will run a bioinformatics analysis of post-quantification CyTOF pipeline. Supports multiple samples analysis.

CyTOFPip(
  project_name = "Ursa_CyTOF",
  input_dir = "./",
  output_dir = "./",
  pheno_file
)

`project_name`	Project name. 'Ursa_CyTOF' by default.
`input_dir`	Directory to all input files. Current working directory by default.
`output_dir`	Output directory. Current working directory by default. A new folder with the given project name with time stamp as suffix will be created under the specified output directory.
`pheno_file`	Meta data file directory. Accept only .csv/.txt format files.