scATACPip: Run a post-quantification 10X technology-format scATAC...

In eudoraleer/Ursa: An Automated Multi-omics Package for Single-cell Analysis

Run a post-quantification 10X technology-format scATAC Transcriptomics pipeline

Description

This function will run a bioinformatics analysis of post-quantification scATAC pipeline. Supports multiple samples analysis.

Usage

scATACPip(
  project_name = "Ursa_scATAC",
  input_dir = "./",
  output_dir = "./",
  pheno_file
)

Arguments

project_name	Project name. 'Ursa_scATAC' by default.
input_dir	Directory to all input files. Current working directory by default.
output_dir	Output directory. Current working directory by default. A new folder with the given project name with time stamp as suffix will be created under the specified output directory.
pheno_file	Meta data file directory. Accept only .csv/.txt format files.

eudoraleer/Ursa documentation built on Nov. 26, 2022, 10:35 p.m.