| align_rt | ... |
| augment_annotation | Augment |
| choose_fi | Choose a representative feature intensity |
| cluster | ... |
| combine_data | Combine data sets |
| control_fdr | Filter the data by p-value |
| filter_accession | Filter UniProt accessions by count |
| infer_pf | ... |
| merge_clusters | Merge clusters using at mass/retention time envelope |
| merge_clusters_oc | Merge clusters using the overlap coefficient |
| pval_cutoff | Calculate p-value cutoff |
| recalibrate_mass | Recalibrate the mass |
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