filter_accession: Filter UniProt accessions by count

Description Usage Arguments Value

Description

Filters out UniProt accessions that occur in fewer than threshold project IDs. Accessions are counted by the count_by argument. For example, if threshold is 10 and count_by is Gene all rows containing UniProt accessions that occur in fewer than 10 project IDs will be removed. UniProt accessions are counted within Gene.

Usage

1
filter_accession(x, count_by, threshold = 10)

Arguments

x

...

count_by

A Character string indicating what variable observations should be counted by (e.g., Gene, ProteoForm, ...).

threshold

An integer indicating the number of subjects (or project IDs) a UniProt accession must occur in to be kept. The default is 10.

Value

...


evanamartin/TopPICRDMS documentation built on Dec. 20, 2021, 6:46 a.m.