sep.hp: Hypergeometric (HerdPlus) population sensitivity for...

In evansergeant/RSurveillance: Design and Analysis of Disease Surveillance Activities

Description

Calculates population sensitivity for a finite population and allowing for imperfect test sensitivity and specificity, using Hypergeometric distribution

Usage

sep.hp(N, n, c = 1, se, sp = 1, pstar)

Arguments

N	population size (scalar or vector of same length as n)
n	sample size (scalar or vector)
c	The cut-point number of positives to classify a cluster as positive, default=1, if positives < c result is negative, >= c is positive (scalar)
se	test unit sensitivity (scalar)
sp	test unit specificity, default=1 (scalar)
pstar	design prevalence as a proportion (scalar)

Value

a vector of population-level sensitivities

Examples

# examples of sep.hp
sep.hp(150, 1:5*10, 2, 0.9, 0.98, 0.1)
sep.hp(150, 30, 2, 0.9, 0.98, 15)
sep.hp(150, 30, 1, 0.9, 0.98, 15)
sep.hp(150, 30, 1, 0.9, 0.98, 0.1)

evansergeant/RSurveillance documentation built on Nov. 8, 2019, 1:32 a.m.