Files in everettJK/gt23
Gene therapy integration analysis tool suite.
DESCRIPTION
NAMESPACE
R/genomicAnnotation.R
R/inspiiredDB.R
R/statistics.R
R/utilities.R
R/visualizations.R
README.md
data/Kingella_kingae_KKKWG1.refSeqGenesGRanges.RData
data/Kingella_kingae_KKKWG1.refSeqGenesGRanges.exons.RData
data/Kingella_kingae_Vir5453.refSeqGenesGRanges.RData
data/Kingella_kingae_Vir5453.refSeqGenesGRanges.exons.RData
data/canFam3.humanXeno.refSeqGenesGRanges.RData
data/canFam3.humanXeno.refSeqGenesGRanges.exons.RData
data/canFam3.refSeqGenesGRanges.RData
data/canFam3.refSeqGenesGRanges.exons.RData
data/hg18.refSeqGenesGRanges.RData
data/hg18.refSeqGenesGRanges.exons.RData
data/hg38.ccds.RData
data/hg38.lymphomaGenesList.RData
data/hg38.oncoGeneList.RData
data/hg38.oreganno.RData
data/hg38.randomFragments.1000000.100.RData
data/hg38.refSeqGenesGRanges.RData
data/hg38.refSeqGenesGRanges.exons.RData
data/macFas5.humanXeno.refSeqGenesGRanges.RData
data/macFas5.humanXeno.refSeqGenesGRanges.exons.RData
data/macFas5.refSeqGenesGRanges.RData
data/macFas5.refSeqGenesGRanges.exons.RData
data/mm9.oncoGeneList.RData
data/mm9.refSeqGenesGRanges.RData
data/mm9.refSeqGenesGRanges.exons.RData
data/mm9randomFragments.1000000.100.RData
data/none.RData
data/susScr3.refSeqGenesGRanges.RData
data/susScr3.refSeqGenesGRanges.exons.RData
man/addPositionID.Rd
man/annotateIntSites.Rd
man/calcSampleAbunds.Rd
man/collapseReplicatesCalcAbunds.Rd
man/createIntUCSCTrack.Rd
man/defaultGenomeFileMappings.Rd
man/disconnectAllDBs.Rd
man/expandTimePoints.Rd
man/getDBgenomicFragments.Rd
man/getPatientRunDetails.Rd
man/getRunDetails.Rd
man/getSampleSheetDetails.Rd
man/intSiteDistributionPlot.Rd
man/nearestGenomicFeature.Rd
man/numShortHand.Rd
man/ppNum.Rd
man/scanStats.Rd
man/stdIntSiteFragments.Rd
man/tuneScanStatistics.Rd
man/validateGenomeFileMap.Rd
scripts/annotations/ccds/June2019/hg38.ccdsGene.txt.gz
scripts/annotations/geneReferences/June2019/canFam3.refGene.txt.gz
scripts/annotations/geneReferences/June2019/canFam3.xenoRefGene.txt.gz
scripts/annotations/geneReferences/June2019/hg18.refGene.txt.gz
scripts/annotations/geneReferences/June2019/hg38.refGene.txt.gz
scripts/annotations/geneReferences/June2019/hg38.refSeq.curated.txt.gz
scripts/annotations/geneReferences/June2019/hg38.refSeq.txt.gz
scripts/annotations/geneReferences/June2019/macFas5.refGene.txt.gz
scripts/annotations/geneReferences/June2019/macFas5.xenoRefGene.txt.gz
scripts/annotations/geneReferences/June2019/mm9.refGene.txt.gz
scripts/annotations/geneReferences/June2019/susScr3.refGene.txt.gz
scripts/annotations/geneReferences/Oct2019/GCF_000470375.1_Vir5453_genomic.gbff
scripts/annotations/geneReferences/Oct2019/GCF_001458475.1_KKKWG1_genomic.gbff
scripts/annotations/geneReferences/Oct2019/GCF_001458475.1_KKKWG1_genomic.gbff.org
scripts/annotations/regulation/June2019/hg38.oreganno.txt.gz
scripts/correctPreviousMouseOncoGeneSymbols.R
scripts/createGenomeObjects.R
scripts/createUCSCdataObjects.R
scripts/mouseOncoGeneSymbolLookup
scripts/test.R
