stdIntSiteFragments: Standardize genomic fragments from intSite experiments using...

In everettJK/gt23: Gene therapy integration analysis tool suite.

Standardize genomic fragments from intSite experiments using the gintools package.

Description

Standardize genomic fragments from intSite experiments using the gintools package.

Usage

stdIntSiteFragments(frags, CPUs = 10, countsCol = "reads")

Arguments

frags	GenomicRange object containing genomic fragments where fragments with positive strands are assumed to have their integration positions on the left and break points on the right (opposite assumed from negative strand).
CPUs	Number of CPUs to use for break point standardizations.
countsCol	Name of meta data column containing the number of times fragments were observed.

everettJK/gt23 documentation built on May 16, 2024, 12:04 p.m.