Man pages for everettJK/gt23
Gene therapy integration analysis tool suite.
| addPositionID | Add position id, ie. chrX+231231 to GRange object. |
| annotateIntSites | Calculate nearest genomic and onocogene features. |
| calcSampleAbunds | Estimate abundances by number of unique fragments associated... |
| collapseReplicatesCalcAbunds | Collapse technical replicates and estimate abundances by... |
| createIntUCSCTrack | Annotate genomic ranges |
| defaultGenomeFileMappings | Create a list of default file mappings. |
| disconnectAllDBs | Terminate all MySQL database connections |
| expandTimePoints | Expand character time points to days and months. |
| getDBgenomicFragments | Retrieve intSite data |
| getPatientRunDetails | Retrieve patient sequencing run data |
| getRunDetails | Retrieve sequencing run patient details |
| getSampleSheetDetails | Summarize samples in sequencer sample sheet file. |
| intSiteDistributionPlot | Create a integration site location plot. |
| nearestGenomicFeature | Annotate genomic ranges |
| numShortHand | Abbreviate numbers with scientific suffixes. |
| ppNum | Pretty print numbers with commas. |
| scanStats | Run geneRxCluster scan statistics. Bioinformatics. 2014 Jun... |
| stdIntSiteFragments | Standardize genomic fragments from intSite experiments using... |
| tuneScanStatistics | Run a number of combination of settings for geneRxCluster... |
| validateGenomeFileMap | Validate that each named data object in genome file mapping... |
