API for ewymathe/testALTREinstall
Workflow for Identifying Regulatory Elements from Chromatin Accessibility Assay Data
| Global functions | |
|---|---|
| ALTRE | Man page |
| ALTRE-package | Man page |
| categAltrePeaks | Man page |
| combineAnnotatePeaks | Man page |
| comparePeaksAltre | Man page |
| countanalysis | Man page |
| enrichHeatmap | Man page |
| getConsensusPeaks | Man page |
| getCounts | Man page |
| getTSS | Man page |
| grangestodataframe | Man page |
| loadBamFiles | Man page |
| loadBedFiles | Man page |
| loadCSVFile | Man page |
| mergeclosepeaks | Man page |
| multiplot | Man page |
| pathenrich | Man page |
| plotCombineAnnotatePeaks | Man page |
| plotConsensusPeaks | Man page |
| plotCountAnalysis | Man page |
| plotDistCountAnalysis | Man page |
| plotallvenn | Man page |
| plotgetcounts | Man page |
| plotvenn | Man page |
| runShinyApp | Man page |
| rundose | Man page |
| statscombineannotate | Man page |
| tssannotgrange | Man page |
| writeAnnotatedRegions | Man page |
| writeBedFile | Man page |
| writePathEnrich | Man page |
| writeREdf | Man page |
