Description Usage Arguments Value Examples
Given the output from getConsensusPeaks, generate a barplot of countstatistics
1 | plotConsensusPeaks(samplepeaks)
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samplepeaks |
output generated from getConsensusPeaks |
a ggplot
1 2 3 4 5 6 7 8 9 | ## Not run:
dir <- system.file('extdata', package='ALTRE', mustWork=TRUE)
csvfile <- file.path(dir, 'lung.csv')
sampleinfo <- loadCSVFile(csvfile)
samplePeaks <- loadBedFiles(sampleinfo)
consPeaks <- getConsensusPeaks(samplepeaks=samplePeaks, minreps=2)
plotConsensusPeaks(samplepeaks = consPeaks)
## End(Not run)
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