| anabel | Generates anagrams for every microRNA seed |
| clump2gff | Transforms the output of miRclump to gff format |
| freq | Calculates the frequenciesof observing any microRNA seed |
| Mapping | Maps the mRNA sequences whose have high freuencies of... |
| miRclump | Returns the mRNA sequences with high frequencies of microRNA... |
| parseMIR | Load the microRNA seeds from the mature microRNA file |
| revComp | Returns the reverse complement DNA sequence. |
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