Description Usage Arguments Value Examples
View source: R/visualisation.R
Draw network of enriched functional annotation pairs
1 | draw_network(graph, pval = 0.05, adjMethod = NULL, seed = 123)
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graph |
The output of either the pafway or pafway_edge_weight functions |
pval |
The threshold of p-value at which to draw an arrow |
adjMethod |
The method for correcting for multiple hypotheses. This can be any method that is acceptable to the p.adjust function in the stats package: "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr" or "none". If this is NULL, then no adjustment will be made. |
seed |
The random seed that will be used. |
A matrix that has the same number of rows and columns as length(GOtypes). This will contain p-values.
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