Files in facileverse/FacileAnalysis
Modularized and interactive analyses over a FacileDataStore

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/api.R R/biocbox.R R/facile_api_extras.R R/fdge-base.R R/fdge-compare.R R/fdge-helpers.R R/fdge-interact.R R/feature-rankings.R R/ffsea-base.R R/ffsea-interact.R R/ffsea-meta.R R/flm_def-base.R R/fpca-base.R R/fpca-compare.R R/fpca-interact.R R/logging.R R/messages-warnings-errors.R R/package.R R/serialization.R R/sparrow-extensions.R R/test-helpers.R R/unfds.R R/utils.R README.Rmd README.md
codecov.yml
inst/extdata/analysis-params/fdge/assay-methods.csv
inst/extdata/analysis-params/fdge/method-params.csv
inst/extdata/testdata/ttest-res.csv
inst/scripts/edgeRQLF-workflow.R man/FacileAnalysisResultViz.Rd man/biocbox.Rd man/comparable.Rd man/compare.Rd man/contrast.Rd man/design.Rd man/faro.Rd man/fdge-helpers.Rd man/fdge.Rd man/fdge_methods.Rd man/ffsea.Rd man/ffsea_methods.Rd
man/figures/fdge-shine.gif
man/figures/fdge-shine.png
man/figures/vignette-fdgeGadget-trim.gif
man/figures/vignette-shine-dge-short.gif
man/figures/vignette-shine-fpca.gif
man/figures/vignette-shine-pca-gsea.gif
man/flm_def.Rd man/fpca.Rd man/messages-warnings-errors.Rd man/model.Rd man/param.Rd man/ranks_and_signatures.Rd man/redo.Rd man/reexports.Rd man/refds.Rd man/serialize.Rd man/signature.Rd man/signed.Rd man/status.Rd man/unfds.Rd man/with_sample_covs.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
tests/.gitignore
tests/scratch/flmdef-wtf.R tests/testthat.R tests/testthat/helper-FacileAnalyisResult-validity.R tests/testthat/test-biocbox.R tests/testthat/test-facile_api_extensions.R tests/testthat/test-fdge.R tests/testthat/test-fdge_model_def.R tests/testthat/test-ffsea.R tests/testthat/test-flm_def.R tests/testthat/test-fpca.R tests/testthat/test-interaction-analysis.R tests/testthat/test-serialization.R vignettes-wip/FacileAnalysis.Rmd vignettes-wip/FacileRnaSeqGene.Rmd vignettes-wip/FacileRnaSeqGeneEdgeRQL-tests.Rmd vignettes-wip/FacileRnaSeqGeneEdgeRQL.Rmd vignettes/FacileAnalysis-RNAseq.Rmd vignettes/FacileAnalysis-examples.Rmd vignettes/FacileAnalysis-fdge.Rmd vignettes/FacileAnalysis-fpca.Rmd vignettes/FacileAnalysis-fsea.Rmd
vignettes/custom.css
vignettes/images/animated/vignette-fdgeGadget-trim.gif
vignettes/images/animated/vignette-shine-dge-short.gif
vignettes/images/animated/vignette-shine-fpca.gif
vignettes/images/animated/vignette-shine-pca-gsea.gif
vignettes/images/icons/INFO.txt
vignettes/images/icons/callout-border.png
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vignettes/images/icons/wip-full.png
vignettes/images/icons/wip.png
vignettes/library.bib
vignettes/vignette.css
facileverse/FacileAnalysis documentation built on Sept. 26, 2024, 3:19 p.m.