fetch_sample_statistics.FacileDataSet: Fetch the sample statistics for sets of samples in the...

In facileverse/FacileData: A fluent API for accessing multi-assay high-throughput genomics data

Fetch the sample statistics for sets of samples in the warehouse

Description

NOTE: this function needs the axe. It has been changed to use the assay_sample_info_table, but the way we handle this with the new unhinged assay needs to change.

Usage

## S3 method for class 'FacileDataSet'
fetch_sample_statistics(
  x,
  samples = NULL,
  semi = TRUE,
  assay_name = default_assay(x),
  ...
)

Arguments

x	A FacileDataSet object
samples	a data.frame or tbl_sqlite that has dataset and sample_id columns
semi	use semi_join? I've found this to be slow sometimes in SQLite for some reason
assay_name	parameter added to keep old API same with new "unhinged" FacileDataSets.

Value

a tbl_df or tbl_sqlite result from the sample_stats table

See Also

Other API: fetch_assay_score.FacileDataSet(), fetch_custom_sample_covariates.FacileDataSet(), fetch_sample_covariates(), fetch_samples.FacileDataSet(), filter_features.FacileDataSet(), filter_samples.FacileDataSet(), organism.FacileDataSet(), samples.FacileDataSet()

facileverse/FacileData documentation built on Feb. 24, 2024, 7:59 a.m.