PPIplot: PPI network visulization

Description Usage Arguments Author(s)

Description

Plot protenin-protein interaction network by igraph

Usage

1
PPIplot(net, STRINGTheta = 0, savename)

Arguments

net

Edgelist from PPIFromString, PPIFromStringEnsembl and PPIFromBioGRID

STRINGTheta

The threshold for PPI edges selections when using STRING

savename

Name for saving PPI edge list as plain file and also saving nodes in largest connected component and figure as eps format by default

Author(s)

Dong Li, dxl466@cs.bham.ac.uk


fairmiracle/PPINet documentation built on May 16, 2019, 9:59 a.m.