| calc.ai_new | Determnine Allelic imbalance |
| calc.hrd | Determnine number of loss-off heterosigosity |
| calc.lst | Determnine large-scale transitions |
| hello | Hello, World! |
| preprocess.hrd | Preprocessing for further analysis |
| preprocess.seqz | Preprocessing seqz files |
| scar_score | Scar score |
| shrink.seg.ai | unite neighbouring segments if possible |
| shrink.seg.ai.wrapper | unite neighbouring segments if possible |
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