calc.ai_new: Determnine Allelic imbalance
In farkkilab/scarHRD: Estimating Genomic scars signatures (LST, TAI,LOH)
Description
Usage
Arguments
Value
Description
Determnine Allelic imbalance
Usage
1
2
calc.ai_new(seg, chrominfo, min.size = 1e+06, cont = 0,
ploidyByChromosome = TRUE, shrink = TRUE)
Arguments
seg
segmentation data
chrominfo
reference genome version
min.size
min.size
ploidyByChromosome
option to determine ploidy per chromosome
shrink
shrink
Value
number of Allelic Imbalances
farkkilab/scarHRD documentation built on May 6, 2020, 6:32 p.m.
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Description Usage Arguments Value
Description
Determnine Allelic imbalance
Usage
1 2 | calc.ai_new(seg, chrominfo, min.size = 1e+06, cont = 0,
ploidyByChromosome = TRUE, shrink = TRUE)
|
Arguments
seg |
segmentation data |
chrominfo |
reference genome version |
min.size |
min.size |
ploidyByChromosome |
option to determine ploidy per chromosome |
shrink |
shrink |
Value
number of Allelic Imbalances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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