calc.lst: Determnine large-scale transitions
In farkkilab/scarHRD: Estimating Genomic scars signatures (LST, TAI,LOH)
Description
Usage
Arguments
Value
Description
Determnine large-scale transitions
Usage
1
calc.lst(seg, chrominfo = chrominfo, nA = 7, chr.arm = "no")
Arguments
seg
segmentation data
chrominfo
reference genome version
nA
column number of copy number of A allele
chr.arm
option to use chromosome arms defined during segmentation
Value
number of LSTs
farkkilab/scarHRD documentation built on May 6, 2020, 6:32 p.m.
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Description Usage Arguments Value
Description
Determnine large-scale transitions
Usage
1 | calc.lst(seg, chrominfo = chrominfo, nA = 7, chr.arm = "no")
|
Arguments
seg |
segmentation data |
chrominfo |
reference genome version |
nA |
column number of copy number of A allele |
chr.arm |
option to use chromosome arms defined during segmentation |
Value
number of LSTs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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