Files in fasterius/seqCAT
High Throughput Sequencing Cell Authentication Toolkit
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENCE
NAMESPACE
R/calculate_similarity.R
R/compare_many.R
R/compare_profiles.R
R/create_profile.R
R/data.R
R/filter_variants.R
R/list_variants.R
R/plot_heatmap.R
R/plot_impacts.R
R/plot_variant_list.R
R/read_cosmic.R
R/read_profile.R
R/seqCAT.R
R/write_profile.R
README.md
data/test_comparison.rda
data/test_profile_1.rda
data/test_profile_2.rda
data/test_profile_3.rda
data/test_similarities.rda
data/test_variant_list.rda
inst/CITATION
inst/NEWS
inst/extdata/example.vcf.gz
inst/extdata/sample1.vcf.gz
inst/extdata/subset_CosmicCLP_MutantExport.tsv.gz
inst/extdata/subset_CosmicCompleteTargetedScreensMutantExport.tsv.gz
inst/extdata/test.gvcf.gz
inst/extdata/test.unannotated.vcf.gz
inst/extdata/test.vcf.gz
inst/extdata/test_1.profile.bed.gz
inst/extdata/test_1.profile.gff.gz
inst/extdata/test_1.profile.gtf.gz
inst/extdata/test_1.profile.txt.gz
inst/extdata/test_2.profile.txt.gz
inst/extdata/test_3.profile.txt.gz
man/.Rapp.history
man/calculate_similarity.Rd
man/compare_many.Rd
man/compare_profiles.Rd
man/create_profile.Rd
man/create_profiles.Rd
man/figures/README_example_1.png
man/figures/README_seqCAT_logo.png
man/figures/seqCAT_logo.ai
man/filter_duplicates.Rd
man/filter_variants.Rd
man/list_cosmic.Rd
man/list_variants.Rd
man/plot_heatmap.Rd
man/plot_impacts.Rd
man/plot_variant_list.Rd
man/read_cosmic.Rd
man/read_profile.Rd
man/read_profiles.Rd
man/seqCAT.Rd
man/test_comparison.Rd
man/test_profile_1.Rd
man/test_profile_2.Rd
man/test_profile_3.Rd
man/test_similarities.Rd
man/test_variant_list.Rd
man/write_profile.Rd
man/write_profiles.Rd
tests/testthat.R
tests/testthat/test_01_create_profile.R
tests/testthat/test_02_filter_variants.R
tests/testthat/test_03_read_profile.R
tests/testthat/test_04_compare_profiles.R
tests/testthat/test_05_calculate_similarity.R
tests/testthat/test_06_compare_many.R
tests/testthat/test_07_read_cosmic.R
tests/testthat/test_08_list_variants.R
tests/testthat/test_09_write_profile.R
vignettes/bibliography.bib
vignettes/seqCAT.Rmd
