compare_many: Comparisons of many SNV profiles

In fasterius/seqCAT: High Throughput Sequencing Cell Authentication Toolkit

Description

Overlap and compare genotypes in many SNV profiles.

Usage

compare_many(many, one = NULL, a = 1, b = 5)

Arguments

many	SNV profiles to be compared (list of dataframes).
one	SNV profile to be compared to all others (dataframe).
a	Similarity score parameter a (integer).
b	Similarity score parameter b (integer).

Details

This is a function that compares all the combinations of the SNV profiles input to it, either in a one-to-many or many-to-many manner. It returns both a dataframe containing summary statistics for all unique combinations and a list of dataframes with all the performed comparisons, for easy re-use and downstream analyses of said comparisons.

Value

A list of summary statistics and comparisons.

Examples

# Load test data
data(test_profile_1)
data(test_profile_2)

# Perform many-to-many comparisons
profiles <- list(test_profile_1, test_profile_2)
comparisons <- compare_many(profiles)

# View aggregate similarities
## Not run: comparisons[[1]])

# View data of first comparison
## Not run: head(comparisons[[2]][[1]])

fasterius/seqCAT documentation built on Feb. 12, 2022, 7:24 p.m.