get_modified: 'get_modified' extract required modification information...
In faye-yang/MSPTM: R Package of visualization of PTM of Mass spetrometry analysis

get_modified extract required modification information (modification location, modified sequence, type of modification) from protein information

1	get_modified(uid, modification, result.file)

`uid`	prot.uid attribute from result.file's peptide slot
`modification`	interested modifications
`result.file`	full information of x!tandem search engine return

A dataframe that contain protein's uid, sequence, location of modification, type of modification.

modification<-data.frame("type"=c("Carbamidomethyl","Oxidation"), "monomass"=c(57.022, 16.0), "AA"=c("C","M")) get_modified(uid=4,modification)

faye-yang/MSPTM documentation built on May 21, 2019, 4:05 a.m.

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README.md

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