tandem_get_data: 'tandem_get_data' extract required data(modification, peptide...
In faye-yang/MSPTM: R Package of visualization of PTM of Mass spetrometry analysis
Description
Usage
Arguments
Value
Description
transform the rtandem output file to a data variables that can be accepted by
PTM_finderfunction.
Usage
1
tandem_get_data(result, modification, uids)
Arguments
result
a output file from rtandem package that contain mass to charge,
peptide sequence, protein information, modification
modification
modification information that are investigated
uids
proteins id that you want to investigate
Value
A numeric vector.
modification<-data.frame("type"=c("Carbamidomethyl","Oxidation")
,"monomass"=c(57.022, 16.0), "AA"=c("C","M"))
tandem_get_data(result.file,modification)
faye-yang/MSPTM documentation built on May 21, 2019, 4:05 a.m.
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Description Usage Arguments Value
Description
transform the rtandem output file to a data variables that can be accepted by PTM_finderfunction.
Usage
1 | tandem_get_data(result, modification, uids)
|
Arguments
result |
a output file from rtandem package that contain mass to charge, peptide sequence, protein information, modification |
modification |
modification information that are investigated |
uids |
proteins id that you want to investigate |
Value
A numeric vector.
modification<-data.frame("type"=c("Carbamidomethyl","Oxidation") ,"monomass"=c(57.022, 16.0), "AA"=c("C","M")) tandem_get_data(result.file,modification)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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