downSample: Down-sample RNA-seq data. Down-sample full dataset to a...

In fayezor/myRpackage:

Description

Down-sample RNA-seq data. Down-sample full dataset to a smaller dataset of specified size.

Usage

downSample(dataset, group = NULL, nreps, depth, nsims = 20)

Arguments

dataset	Numeric count matrix; full dataset from which to down-sample. Note that for my purposes, this full dataset is simulated.
group	Vector or factor giving the experimental group/condition for each sample/library in the full dataset.
nreps	Desired number of replicates per group.
depth	Desired depth (library size) in millions for each sample.
nsims	Number of simulations to run, i.e. number of datasets to generate of this size.

Value

Doesn't return anything, just saves the down-sampled datasets as RData.

fayezor/myRpackage documentation built on May 16, 2019, 11:01 a.m.