Files in fbertran/Patterns
Deciphering Biological Networks with Patterned Heterogeneous Measurements
.Rbuildignore
.Rproj.user/AF86C25B/pcs/files-pane.pper
.Rproj.user/AF86C25B/pcs/source-pane.pper
.Rproj.user/AF86C25B/pcs/windowlayoutstate.pper
.Rproj.user/AF86C25B/pcs/workbench-pane.pper
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
Patterns.Rproj
R/Patterns-package.R
R/datasets.R
R/global.R
R/omics_array-omics_network.R
R/omics_array.R
R/omics_network.R
R/omics_predict.R
README.Rmd
README.md
README_cache/html/__packages
README_cache/html/analyzenet_b490919027785c4d7315cbcbd226d8a9.RData
README_cache/html/analyzenet_b490919027785c4d7315cbcbd226d8a9.rdb
README_cache/html/analyzenet_b490919027785c4d7315cbcbd226d8a9.rdx
README_cache/html/cutoff_29701162a878e71a7a803dc488564442.RData
README_cache/html/cutoff_29701162a878e71a7a803dc488564442.rdb
README_cache/html/cutoff_29701162a878e71a7a803dc488564442.rdx
README_cache/html/microselection1_7dfa6a3d47c034a528ddbe8e4bf7b436.RData
README_cache/html/microselection1_7dfa6a3d47c034a528ddbe8e4bf7b436.rdb
README_cache/html/microselection1_7dfa6a3d47c034a528ddbe8e4bf7b436.rdx
README_cache/html/microselection2_842f8eb60602c2a281755620bd97e22e.RData
README_cache/html/microselection2_842f8eb60602c2a281755620bd97e22e.rdb
README_cache/html/microselection2_842f8eb60602c2a281755620bd97e22e.rdx
README_cache/html/microselection3_6a9d4057f54816dd7f74a200cfa24840.RData
README_cache/html/microselection3_6a9d4057f54816dd7f74a200cfa24840.rdb
README_cache/html/microselection3_6a9d4057f54816dd7f74a200cfa24840.rdx
README_cache/html/microselection4_6086751cf38d39f36a216a2989f73148.RData
README_cache/html/microselection4_6086751cf38d39f36a216a2989f73148.rdb
README_cache/html/microselection4_6086751cf38d39f36a216a2989f73148.rdx
README_cache/html/netinfEN_f1487a29194cee55731f855c709fc359.RData
README_cache/html/netinfEN_f1487a29194cee55731f855c709fc359.rdb
README_cache/html/netinfEN_f1487a29194cee55731f855c709fc359.rdx
README_cache/html/netinfLC_8c30bf5f94981532d4f74e5a336d5513.RData
README_cache/html/netinfLC_8c30bf5f94981532d4f74e5a336d5513.rdb
README_cache/html/netinfLC_8c30bf5f94981532d4f74e5a336d5513.rdx
README_cache/html/netinfRobust_bc68b2fb29cea758efd6bb5f64d7593d.RData
README_cache/html/netinfRobust_bc68b2fb29cea758efd6bb5f64d7593d.rdb
README_cache/html/netinfRobust_bc68b2fb29cea758efd6bb5f64d7593d.rdx
README_cache/html/netinfSBW_6c1f2d3fe744cdde2c1df2f26490334c.RData
README_cache/html/netinfSBW_6c1f2d3fe744cdde2c1df2f26490334c.rdb
README_cache/html/netinfSBW_6c1f2d3fe744cdde2c1df2f26490334c.rdx
README_cache/html/netinfSB_35cc9f8e72da29e04d0beef6583961e9.RData
README_cache/html/netinfSB_35cc9f8e72da29e04d0beef6583961e9.rdb
README_cache/html/netinfSB_35cc9f8e72da29e04d0beef6583961e9.rdx
README_cache/html/netinfSPLS_c4059f126190f2c5e79301ddad554c37.RData
README_cache/html/netinfSPLS_c4059f126190f2c5e79301ddad554c37.rdb
README_cache/html/netinfSPLS_c4059f126190f2c5e79301ddad554c37.rdx
README_cache/html/netinfStabWeight_41f012f556ec80c3ece815ed4bdee78f.RData
README_cache/html/netinfStabWeight_41f012f556ec80c3ece815ed4bdee78f.rdb
README_cache/html/netinfStabWeight_41f012f556ec80c3ece815ed4bdee78f.rdx
README_cache/html/netinfStab_0a91da699b3fec2f9b15cf740d789759.RData
README_cache/html/netinfStab_0a91da699b3fec2f9b15cf740d789759.rdb
README_cache/html/netinfStab_0a91da699b3fec2f9b15cf740d789759.rdx
README_cache/html/netinfdefault_cf9cdb791ef5ceb5cdecb60c51be818e.RData
README_cache/html/netinfdefault_cf9cdb791ef5ceb5cdecb60c51be818e.rdb
README_cache/html/netinfdefault_cf9cdb791ef5ceb5cdecb60c51be818e.rdx
README_cache/html/netinflasso2Weighted_1703e012574fec7b2e8de983afce97fc.RData
README_cache/html/netinflasso2Weighted_1703e012574fec7b2e8de983afce97fc.rdb
README_cache/html/netinflasso2Weighted_1703e012574fec7b2e8de983afce97fc.rdx
README_cache/html/netinflasso2_158369f4810eacaba276281119ce33ed.RData
README_cache/html/netinflasso2_158369f4810eacaba276281119ce33ed.rdb
README_cache/html/netinflasso2_158369f4810eacaba276281119ce33ed.rdx
README_cache/html/plotmicroarrayclass_7c13c88ffb5d08dbe43b625350df966e.RData
README_cache/html/plotmicroarrayclass_7c13c88ffb5d08dbe43b625350df966e.rdb
README_cache/html/plotmicroarrayclass_7c13c88ffb5d08dbe43b625350df966e.rdx
README_cache/html/plotsimuldata_0a9de30cd9a82ec257e4037ee113d2f3.RData
README_cache/html/plotsimuldata_0a9de30cd9a82ec257e4037ee113d2f3.rdb
README_cache/html/plotsimuldata_0a9de30cd9a82ec257e4037ee113d2f3.rdx
README_cache/html/summarysimuldata_b8e451cb666fb6ceb6024974d5df1d0e.RData
README_cache/html/summarysimuldata_b8e451cb666fb6ceb6024974d5df1d0e.rdb
README_cache/html/summarysimuldata_b8e451cb666fb6ceb6024974d5df1d0e.rdx
add_data/CLL.RData
add_data/Homo_sapiens_TF
add_data/glmnet.pdf
animation.gif
cache/HumanTFDB_4a725722140a1fc036381f06cc38c240.RData
cache/HumanTFDB_4a725722140a1fc036381f06cc38c240.rdb
cache/HumanTFDB_4a725722140a1fc036381f06cc38c240.rdx
cache/TFinsel_fa5108031e9885bcb6f3e0f9e4090260.RData
cache/TFinsel_fa5108031e9885bcb6f3e0f9e4090260.rdb
cache/TFinsel_fa5108031e9885bcb6f3e0f9e4090260.rdx
cache/__packages
cache/addgeneid_fbd3e64f26349ff39f2e75d05199de61.RData
cache/addgeneid_fbd3e64f26349ff39f2e75d05199de61.rdb
cache/addgeneid_fbd3e64f26349ff39f2e75d05199de61.rdx
cache/analyzenet_5f01b01abf225206800f9f60dea38462.RData
cache/analyzenet_5f01b01abf225206800f9f60dea38462.rdb
cache/analyzenet_5f01b01abf225206800f9f60dea38462.rdx
cache/checkgroup_4e544a78beba61e5833753af9b5f88fe.RData
cache/checkgroup_4e544a78beba61e5833753af9b5f88fe.rdb
cache/checkgroup_4e544a78beba61e5833753af9b5f88fe.rdx
cache/cutoff_7c775f66b83cbb54331c359a907e8688.RData
cache/cutoff_7c775f66b83cbb54331c359a907e8688.rdb
cache/cutoff_7c775f66b83cbb54331c359a907e8688.rdx
cache/focusEGR1_bcb0d856665923fbc52fd4d0cce346ac.RData
cache/focusEGR1_bcb0d856665923fbc52fd4d0cce346ac.rdb
cache/focusEGR1_bcb0d856665923fbc52fd4d0cce346ac.rdx
cache/inference_3646c2c9f70ef8f6421c80184462cf8b.RData
cache/inference_3646c2c9f70ef8f6421c80184462cf8b.rdb
cache/inference_3646c2c9f70ef8f6421c80184462cf8b.rdx
cache/microselection1_5cbb526fdee347253dc63a5892bfae00.RData
cache/microselection1_5cbb526fdee347253dc63a5892bfae00.rdb
cache/microselection1_5cbb526fdee347253dc63a5892bfae00.rdx
cache/microselection2_a3d404a70fadcaeb14ff5a7da24b6728.RData
cache/microselection2_a3d404a70fadcaeb14ff5a7da24b6728.rdb
cache/microselection2_a3d404a70fadcaeb14ff5a7da24b6728.rdx
cache/microselection3_2fc310e204df3d7cb8247a27f4711539.RData
cache/microselection3_2fc310e204df3d7cb8247a27f4711539.rdb
cache/microselection3_2fc310e204df3d7cb8247a27f4711539.rdx
cache/microselection4_9244596503f458d14ce06b8f9dc6f831.RData
cache/microselection4_9244596503f458d14ce06b8f9dc6f831.rdb
cache/microselection4_9244596503f458d14ce06b8f9dc6f831.rdx
cache/netinfEN_eda6672c12fc039737a1a4b02f48d844.RData
cache/netinfEN_eda6672c12fc039737a1a4b02f48d844.rdb
cache/netinfEN_eda6672c12fc039737a1a4b02f48d844.rdx
cache/netinfLC_592f5c293402eb08187731231bf35008.RData
cache/netinfLC_592f5c293402eb08187731231bf35008.rdb
cache/netinfLC_592f5c293402eb08187731231bf35008.rdx
cache/netinfRobust_817fc250d1dc5b44f5a6fddf82e723fb.RData
cache/netinfRobust_817fc250d1dc5b44f5a6fddf82e723fb.rdb
cache/netinfRobust_817fc250d1dc5b44f5a6fddf82e723fb.rdx
cache/netinfSBW_4eceee140438cc69834108c0a358666a.RData
cache/netinfSBW_4eceee140438cc69834108c0a358666a.rdb
cache/netinfSBW_4eceee140438cc69834108c0a358666a.rdx
cache/netinfSB_81692093c196cf0c7f8ed27c8625a239.RData
cache/netinfSB_81692093c196cf0c7f8ed27c8625a239.rdb
cache/netinfSB_81692093c196cf0c7f8ed27c8625a239.rdx
cache/netinfSPLS_4539ef922cd69040eb2ea3550437cd0e.RData
cache/netinfSPLS_4539ef922cd69040eb2ea3550437cd0e.rdb
cache/netinfSPLS_4539ef922cd69040eb2ea3550437cd0e.rdx
cache/netinfStabWeight_8abf4a2356fcad60fa5aab600779992f.RData
cache/netinfStabWeight_8abf4a2356fcad60fa5aab600779992f.rdb
cache/netinfStabWeight_8abf4a2356fcad60fa5aab600779992f.rdx
cache/netinfStab_0e5c5025fba211c2201643f856475a0a.RData
cache/netinfStab_0e5c5025fba211c2201643f856475a0a.rdb
cache/netinfStab_0e5c5025fba211c2201643f856475a0a.rdx
cache/netinfdefault_5bde7bfdaec636bc4380cfd79aae49bd.RData
cache/netinfdefault_5bde7bfdaec636bc4380cfd79aae49bd.rdb
cache/netinfdefault_5bde7bfdaec636bc4380cfd79aae49bd.rdx
cache/netinflasso2Weighted_a41b29f6bee332c10b7a6da9c9a4959e.RData
cache/netinflasso2Weighted_a41b29f6bee332c10b7a6da9c9a4959e.rdb
cache/netinflasso2Weighted_a41b29f6bee332c10b7a6da9c9a4959e.rdx
cache/netinflasso2_0000793cd3663f524994956a34ddf9c9.RData
cache/netinflasso2_0000793cd3663f524994956a34ddf9c9.rdb
cache/netinflasso2_0000793cd3663f524994956a34ddf9c9.rdx
cache/omicsselection1_0cb42017e2eb3495c4228e10e46dbfde.RData
cache/omicsselection1_0cb42017e2eb3495c4228e10e46dbfde.rdb
cache/omicsselection1_0cb42017e2eb3495c4228e10e46dbfde.rdx
cache/omicsselection2_7ca2684a8bc3c1a80d777cb6cf7ea31c.RData
cache/omicsselection2_7ca2684a8bc3c1a80d777cb6cf7ea31c.rdb
cache/omicsselection2_7ca2684a8bc3c1a80d777cb6cf7ea31c.rdx
cache/omicsselection3_7634e69d56ed2142d9e3aa119f128842.RData
cache/omicsselection3_7634e69d56ed2142d9e3aa119f128842.rdb
cache/omicsselection3_7634e69d56ed2142d9e3aa119f128842.rdx
cache/omicsselection4_96d914575891a63de181f2ef50d8c337.RData
cache/omicsselection4_96d914575891a63de181f2ef50d8c337.rdb
cache/omicsselection4_96d914575891a63de181f2ef50d8c337.rdx
cache/plotmicroarrayclass_06b432b7d47a6e5890f2b7edf2fce728.RData
cache/plotmicroarrayclass_06b432b7d47a6e5890f2b7edf2fce728.rdb
cache/plotmicroarrayclass_06b432b7d47a6e5890f2b7edf2fce728.rdx
cache/plotomicsarrayclass_38918de3d9ff6a18fe465243237c4dac.RData
cache/plotomicsarrayclass_38918de3d9ff6a18fe465243237c4dac.rdb
cache/plotomicsarrayclass_38918de3d9ff6a18fe465243237c4dac.rdx
cache/plotsimuldata_0d8c9b9cdf1962cc105df79fc6103c6a.RData
cache/plotsimuldata_0d8c9b9cdf1962cc105df79fc6103c6a.rdb
cache/plotsimuldata_0d8c9b9cdf1962cc105df79fc6103c6a.rdx
cache/retcll_1446778b4530d13b7531d0c0a97b9e46.RData
cache/retcll_1446778b4530d13b7531d0c0a97b9e46.rdb
cache/retcll_1446778b4530d13b7531d0c0a97b9e46.rdx
cache/selection1_faba3d5d02637dd5e3b2bcefb6e79e29.RData
cache/selection1_faba3d5d02637dd5e3b2bcefb6e79e29.rdb
cache/selection1_faba3d5d02637dd5e3b2bcefb6e79e29.rdx
cache/selection2_4ae6672d1cb50281895736fb9feeb7d8.RData
cache/selection2_4ae6672d1cb50281895736fb9feeb7d8.rdb
cache/selection2_4ae6672d1cb50281895736fb9feeb7d8.rdx
cache/selection3_b5244f9b8444805458317ff5e77748c8.RData
cache/selection3_b5244f9b8444805458317ff5e77748c8.rdb
cache/selection3_b5244f9b8444805458317ff5e77748c8.rdx
cache/selection4_a6d95cff836b941759cf578be11b46c5.RData
cache/selection4_a6d95cff836b941759cf578be11b46c5.rdb
cache/selection4_a6d95cff836b941759cf578be11b46c5.rdx
cache/sizemergeselection_df5c91f5ab9305a241f3a518875db147.RData
cache/sizemergeselection_df5c91f5ab9305a241f3a518875db147.rdb
cache/sizemergeselection_df5c91f5ab9305a241f3a518875db147.rdx
cache/spltcll_9d6fdb9b48b68a0ef3dc30b7e4609722.RData
cache/spltcll_9d6fdb9b48b68a0ef3dc30b7e4609722.rdb
cache/spltcll_9d6fdb9b48b68a0ef3dc30b7e4609722.rdx
cache/summarysimuldata_c4a56d0a35ed36538c978748fa440fa2.RData
cache/summarysimuldata_c4a56d0a35ed36538c978748fa440fa2.rdb
cache/summarysimuldata_c4a56d0a35ed36538c978748fa440fa2.rdx
cache/translatecll_447f4d80f17074fd8a9f5dc0c2d015f4.RData
cache/translatecll_447f4d80f17074fd8a9f5dc0c2d015f4.rdb
cache/translatecll_447f4d80f17074fd8a9f5dc0c2d015f4.rdx
data/CLL.RData
data/M.RData
data/Net.RData
data/Net_inf_PL.RData
data/Selection.RData
data/datalist
data/doc.RData
data/infos.RData
data/network.RData
data/network2gp.RData
data/networkCascade.RData
docs/404.html
docs/Articles_SAV_20210320/ExampleCLL.html
docs/Articles_SAV_20210320/ExampleCLL_files/figure-html/addgroupselection-1.png
docs/Articles_SAV_20210320/ExampleCLL_files/figure-html/mergeselection-1.png
docs/Articles_SAV_20210320/ExampleCLL_files/figure-html/plotF-1.png
docs/Articles_SAV_20210320/ExampleCLL_files/figure-html/plotTFinsel-1.png
docs/Articles_SAV_20210320/ExampleCLL_files/figure-html/plotTFinsel2-1.png
docs/Articles_SAV_20210320/ExampleCLL_files/header-attrs-2.6/header-attrs.js
docs/Articles_SAV_20210320/IntroPatterns.html
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/Fresults-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/FresultsLC-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/compare-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/heatresults-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotF-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotFpixmap-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotfshape1-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotmicroarrayclass-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotmicroarrayclass-2.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotmicroarrayclass-3.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotmicroarrayclass-4.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotnet-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotnet1-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/figure-html/plotnet2-1.png
docs/Articles_SAV_20210320/IntroPatterns_files/header-attrs-2.6/header-attrs.js
docs/Articles_SAV_20210320/index.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/ExampleCLL.html
docs/articles/ExampleCLL_files/figure-html/addgroupselection-1.png
docs/articles/ExampleCLL_files/figure-html/mergeselection-1.png
docs/articles/ExampleCLL_files/figure-html/plotF-1.png
docs/articles/ExampleCLL_files/figure-html/plotTFinsel-1.png
docs/articles/ExampleCLL_files/figure-html/plotTFinsel2-1.png
docs/articles/ExampleCLL_files/header-attrs-2.6/header-attrs.js
docs/articles/IntroPatterns.html
docs/articles/IntroPatterns_files/figure-html/Fresults-1.png
docs/articles/IntroPatterns_files/figure-html/FresultsLC-1.png
docs/articles/IntroPatterns_files/figure-html/compare-1.png
docs/articles/IntroPatterns_files/figure-html/heatresults-1.png
docs/articles/IntroPatterns_files/figure-html/plotF-1.png
docs/articles/IntroPatterns_files/figure-html/plotFpixmap-1.png
docs/articles/IntroPatterns_files/figure-html/plotfshape1-1.png
docs/articles/IntroPatterns_files/figure-html/plotmicroarrayclass-1.png
docs/articles/IntroPatterns_files/figure-html/plotmicroarrayclass-2.png
docs/articles/IntroPatterns_files/figure-html/plotmicroarrayclass-3.png
docs/articles/IntroPatterns_files/figure-html/plotmicroarrayclass-4.png
docs/articles/IntroPatterns_files/figure-html/plotnet-1.png
docs/articles/IntroPatterns_files/figure-html/plotnet1-1.png
docs/articles/IntroPatterns_files/figure-html/plotnet2-1.png
docs/articles/IntroPatterns_files/figure-html/plotomicsarrayclass-1.png
docs/articles/IntroPatterns_files/figure-html/plotomicsarrayclass-2.png
docs/articles/IntroPatterns_files/figure-html/plotomicsarrayclass-3.png
docs/articles/IntroPatterns_files/figure-html/plotomicsarrayclass-4.png
docs/articles/IntroPatterns_files/header-attrs-2.6/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CLL.html
docs/reference/CascadeFinit-1.png
docs/reference/CascadeFinit-2.png
docs/reference/CascadeFinit.html
docs/reference/CascadeFshape-1.png
docs/reference/CascadeFshape-2.png
docs/reference/CascadeFshape.html
docs/reference/IndicFinit.html
docs/reference/IndicFshape.html
docs/reference/M.html
docs/reference/Net.html
docs/reference/Net_inf_PL.html
docs/reference/Patterns-package.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/Rplot009.png
docs/reference/Rplot010.png
docs/reference/Rplot011.png
docs/reference/Rplot012.png
docs/reference/Rplot013.png
docs/reference/Rplot014.png
docs/reference/Rplot015.png
docs/reference/Rplot016.png
docs/reference/Rplot017.png
docs/reference/Selection-1.png
docs/reference/Selection.html
docs/reference/analyze_network-network-method.html
docs/reference/analyze_network-omics_network-method.html
docs/reference/animation.gif
docs/reference/as.micro_array-1.png
docs/reference/as.micro_array.html
docs/reference/as.omics_array-1.png
docs/reference/as.omics_array.html
docs/reference/clustExploration-micro_array-method-1.png
docs/reference/clustExploration-micro_array-method.html
docs/reference/clustExploration-omics_array-method-1.png
docs/reference/clustExploration-omics_array-method.html
docs/reference/clustInference-micro_array-numeric-method-1.png
docs/reference/clustInference-micro_array-numeric-method-2.png
docs/reference/clustInference-micro_array-numeric-method.html
docs/reference/clustInference-omics_array-numeric-method-1.png
docs/reference/clustInference-omics_array-numeric-method-2.png
docs/reference/clustInference-omics_array-numeric-method.html
docs/reference/compare-methods-1.png
docs/reference/compare-methods.html
docs/reference/cutoff-network-method-1.png
docs/reference/cutoff-network-method.html
docs/reference/cutoff-omics_network-method-1.png
docs/reference/cutoff-omics_network-method.html
docs/reference/dim.html
docs/reference/doc.html
docs/reference/evolution-network-method.html
docs/reference/evolution-omics_network-method.html
docs/reference/evolution/Rplot1.png
docs/reference/evolution/Rplot10.png
docs/reference/evolution/Rplot11.png
docs/reference/evolution/Rplot12.png
docs/reference/evolution/Rplot13.png
docs/reference/evolution/Rplot14.png
docs/reference/evolution/Rplot15.png
docs/reference/evolution/Rplot16.png
docs/reference/evolution/Rplot17.png
docs/reference/evolution/Rplot18.png
docs/reference/evolution/Rplot19.png
docs/reference/evolution/Rplot2.png
docs/reference/evolution/Rplot20.png
docs/reference/evolution/Rplot3.png
docs/reference/evolution/Rplot4.png
docs/reference/evolution/Rplot5.png
docs/reference/evolution/Rplot6.png
docs/reference/evolution/Rplot7.png
docs/reference/evolution/Rplot8.png
docs/reference/evolution/Rplot9.png
docs/reference/evolution/animate.sty
docs/reference/evolution/animation.aux
docs/reference/evolution/animation.gif
docs/reference/evolution/animation.log
docs/reference/evolution/animation.mp4
docs/reference/evolution/animation.pdf
docs/reference/evolution/animation.tex
docs/reference/evolution/animfp.sty
docs/reference/evolution/css/reset.css
docs/reference/evolution/css/scianimator.blue.css
docs/reference/evolution/css/scianimator.css
docs/reference/evolution/css/scianimator.dark.css
docs/reference/evolution/css/scianimator.light.css
docs/reference/evolution/css/styles.css
docs/reference/evolution/images/Rplot1.png
docs/reference/evolution/images/Rplot10.png
docs/reference/evolution/images/Rplot11.png
docs/reference/evolution/images/Rplot12.png
docs/reference/evolution/images/Rplot13.png
docs/reference/evolution/images/Rplot14.png
docs/reference/evolution/images/Rplot15.png
docs/reference/evolution/images/Rplot16.png
docs/reference/evolution/images/Rplot17.png
docs/reference/evolution/images/Rplot18.png
docs/reference/evolution/images/Rplot19.png
docs/reference/evolution/images/Rplot2.png
docs/reference/evolution/images/Rplot20.png
docs/reference/evolution/images/Rplot3.png
docs/reference/evolution/images/Rplot4.png
docs/reference/evolution/images/Rplot5.png
docs/reference/evolution/images/Rplot6.png
docs/reference/evolution/images/Rplot7.png
docs/reference/evolution/images/Rplot8.png
docs/reference/evolution/images/Rplot9.png
docs/reference/evolution/index.html
docs/reference/evolution/js/Rplot.js
docs/reference/evolution/js/jquery-1.4.4.min.js
docs/reference/evolution/js/jquery.scianimator.min.js
docs/reference/figures/Cairo-fa-sitemap.pdf
docs/reference/figures/Cairo-fa-sitemap.svg
docs/reference/figures/README-Fresults-1.png
docs/reference/figures/README-FresultsEN-1.png
docs/reference/figures/README-FresultsLC-1.png
docs/reference/figures/README-FresultsRobust-1.png
docs/reference/figures/README-FresultsSB-1.png
docs/reference/figures/README-FresultsSBW-1.png
docs/reference/figures/README-FresultsSPLS-1.png
docs/reference/figures/README-FresultsStab-1.png
docs/reference/figures/README-FresultsStabWeight-1.png
docs/reference/figures/README-Fresultslasso2-1.png
docs/reference/figures/README-Fresultslasso2Weighted-1.png
docs/reference/figures/README-cutoff-1.png
docs/reference/figures/README-evolutationpkgdown-1.png
docs/reference/figures/README-heatresults-1.png
docs/reference/figures/README-heatresultsEN-1.png
docs/reference/figures/README-heatresultsLC-1.png
docs/reference/figures/README-heatresultsRobust-1.png
docs/reference/figures/README-heatresultsSB-1.png
docs/reference/figures/README-heatresultsSBW-1.png
docs/reference/figures/README-heatresultsSPLS-1.png
docs/reference/figures/README-heatresultsStab-1.png
docs/reference/figures/README-heatresultsStabWeight-1.png
docs/reference/figures/README-heatresultslasso2-1.png
docs/reference/figures/README-heatresultslasso2Weighted-1.png
docs/reference/figures/README-microselection6-1.png
docs/reference/figures/README-microselection6-2.png
docs/reference/figures/README-microselection6-3.png
docs/reference/figures/README-microselection7-1.png
docs/reference/figures/README-microselection7-2.png
docs/reference/figures/README-microselection7-3.png
docs/reference/figures/README-microselection7-4.png
docs/reference/figures/README-microselection7-5.png
docs/reference/figures/README-microselection7-6.png
docs/reference/figures/README-microselection7-7.png
docs/reference/figures/README-microselection7-8.png
docs/reference/figures/README-netinfEN-1.png
docs/reference/figures/README-netinfEN-2.png
docs/reference/figures/README-netinfLC-1.png
docs/reference/figures/README-netinfLC-2.png
docs/reference/figures/README-netinfRobust-1.png
docs/reference/figures/README-netinfRobust-2.png
docs/reference/figures/README-netinfSB-1.png
docs/reference/figures/README-netinfSB-2.png
docs/reference/figures/README-netinfSBW-1.png
docs/reference/figures/README-netinfSBW-2.png
docs/reference/figures/README-netinfSPLS-1.png
docs/reference/figures/README-netinfSPLS-2.png
docs/reference/figures/README-netinfStab-1.png
docs/reference/figures/README-netinfStab-2.png
docs/reference/figures/README-netinfStabWeight-1.png
docs/reference/figures/README-netinfStabWeight-2.png
docs/reference/figures/README-netinfdefault-1.png
docs/reference/figures/README-netinfdefault-2.png
docs/reference/figures/README-netinflasso2-1.png
docs/reference/figures/README-netinflasso2-2.png
docs/reference/figures/README-netinflasso2Weighted-1.png
docs/reference/figures/README-netinflasso2Weighted-2.png
docs/reference/figures/README-netinflibrary()-1.png
docs/reference/figures/README-netinflibrary()-2.png
docs/reference/figures/README-omicsselection6-1.png
docs/reference/figures/README-omicsselection6-2.png
docs/reference/figures/README-omicsselection6-3.png
docs/reference/figures/README-omicsselection7-1.png
docs/reference/figures/README-omicsselection7-2.png
docs/reference/figures/README-omicsselection7-3.png
docs/reference/figures/README-omicsselection7-4.png
docs/reference/figures/README-omicsselection7-5.png
docs/reference/figures/README-omicsselection7-6.png
docs/reference/figures/README-omicsselection7-7.png
docs/reference/figures/README-omicsselection7-8.png
docs/reference/figures/README-plotF-1.png
docs/reference/figures/README-plotFpixmap-1.png
docs/reference/figures/README-plotfshape1-1.png
docs/reference/figures/README-plotfshape2-1.png
docs/reference/figures/README-plotfshape3-1.png
docs/reference/figures/README-plotmicroarrayclass-1.png
docs/reference/figures/README-plotmicroarrayclass-2.png
docs/reference/figures/README-plotmicroarrayclass-3.png
docs/reference/figures/README-plotmicroarrayclass-4.png
docs/reference/figures/README-plotnet-1.png
docs/reference/figures/README-plotnet1-1.png
docs/reference/figures/README-plotnet2-1.png
docs/reference/figures/README-plotomicsarrayclass-1.png
docs/reference/figures/README-plotomicsarrayclass-2.png
docs/reference/figures/README-plotomicsarrayclass-3.png
docs/reference/figures/README-plotomicsarrayclass-4.png
docs/reference/figures/README-plotsimuldata-1.png
docs/reference/figures/README-plotsimuldata-2.png
docs/reference/figures/README-plotsimuldata-3.png
docs/reference/figures/README-plotsimuldata-4.png
docs/reference/figures/README-plotsimuldata-5.png
docs/reference/figures/README-plotsimuldata-6.png
docs/reference/figures/README-plotsimuldata-7.png
docs/reference/figures/README-summarysimuldata-1.png
docs/reference/figures/README-summarysimuldata-2.png
docs/reference/figures/README-summarysimuldata-3.png
docs/reference/figures/fa-sitemap.svg
docs/reference/figures/figure_article_def.png
docs/reference/figures/figure_network_pred2.png
docs/reference/figures/logo.png
docs/reference/figures/logo_Patterns.svg
docs/reference/geneNeighborhood-network-method-1.png
docs/reference/geneNeighborhood-network-method.html
docs/reference/geneNeighborhood-omics_network-method-1.png
docs/reference/geneNeighborhood-omics_network-method.html
docs/reference/geneSelection-1.png
docs/reference/geneSelection-2.png
docs/reference/geneSelection-3.png
docs/reference/geneSelection-4.png
docs/reference/geneSelection-5.png
docs/reference/geneSelection-6.png
docs/reference/geneSelection-7.png
docs/reference/geneSelection-8.png
docs/reference/geneSelection-9.png
docs/reference/geneSelection.html
docs/reference/gene_expr_simulation-network-method.html
docs/reference/gene_expr_simulation-omics_network-method.html
docs/reference/head-micro_array-method.html
docs/reference/head-omics_array-method.html
docs/reference/index.html
docs/reference/inference-1.png
docs/reference/inference-10.png
docs/reference/inference-11.png
docs/reference/inference-12.png
docs/reference/inference-2.png
docs/reference/inference-3.png
docs/reference/inference-4.png
docs/reference/inference-5.png
docs/reference/inference-6.png
docs/reference/inference-7.png
docs/reference/inference-8.png
docs/reference/inference-9.png
docs/reference/inference.html
docs/reference/infos.html
docs/reference/micro_array-class.html
docs/reference/micropredict-class.html
docs/reference/network-1.png
docs/reference/network-class.html
docs/reference/network.html
docs/reference/network2gp-1.png
docs/reference/network2gp.html
docs/reference/networkCascade-1.png
docs/reference/networkCascade.html
docs/reference/network_random-1.png
docs/reference/network_random.html
docs/reference/omics_array-class.html
docs/reference/omics_network-class.html
docs/reference/omics_predict-class.html
docs/reference/plot-methods-1.png
docs/reference/plot-methods.html
docs/reference/plotF-1.png
docs/reference/plotF-2.png
docs/reference/plotF-3.png
docs/reference/plotF-4.png
docs/reference/plotF.html
docs/reference/position-methods.html
docs/reference/predict-micro_array-method-1.png
docs/reference/predict-micro_array-method-2.png
docs/reference/predict-micro_array-method-3.png
docs/reference/predict-micro_array-method-4.png
docs/reference/predict-micro_array-method-5.png
docs/reference/predict-micro_array-method-6.png
docs/reference/predict-micro_array-method.html
docs/reference/predict-omics_array-method-1.png
docs/reference/predict-omics_array-method-2.png
docs/reference/predict-omics_array-method-3.png
docs/reference/predict-omics_array-method-4.png
docs/reference/predict-omics_array-method-5.png
docs/reference/predict-omics_array-method-6.png
docs/reference/predict-omics_array-method.html
docs/reference/print-methods.html
docs/reference/probeMerge-micro_array-method.html
docs/reference/probeMerge-omics_array-method.html
docs/reference/replaceBand.html
docs/reference/replaceDown.html
docs/reference/replaceUp.html
docs/reference/show-methods.html
docs/reference/summary-methods.html
docs/reference/unionMicro-methods.html
docs/reference/unionOmics-methods.html
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-1.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-10.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-11.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-12.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-13.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-14.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-15.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-16.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-17.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-2.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-3.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-4.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-5.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-6.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-7.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-8.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method-9.png
docs/reference/unsupervised_clustering-micro_array-numeric-numeric-method.html
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-1.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-10.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-11.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-12.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-13.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-14.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-15.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-16.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-17.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-2.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-3.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-4.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-5.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-6.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-7.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-8.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method-9.png
docs/reference/unsupervised_clustering-omics_array-numeric-numeric-method.html
docs/reference/unsupervised_clustering_auto_m_c-micro_array-method-1.png
docs/reference/unsupervised_clustering_auto_m_c-micro_array-method.html
docs/reference/unsupervised_clustering_auto_m_c-omics_array-method-1.png
docs/reference/unsupervised_clustering_auto_m_c-omics_array-method.html
docs/sitemap.xml
evolution_example/Rplot1.png
evolution_example/Rplot10.png
evolution_example/Rplot11.png
evolution_example/Rplot12.png
evolution_example/Rplot13.png
evolution_example/Rplot14.png
evolution_example/Rplot15.png
evolution_example/Rplot16.png
evolution_example/Rplot17.png
evolution_example/Rplot18.png
evolution_example/Rplot19.png
evolution_example/Rplot2.png
evolution_example/Rplot20.png
evolution_example/Rplot3.png
evolution_example/Rplot4.png
evolution_example/Rplot5.png
evolution_example/Rplot6.png
evolution_example/Rplot7.png
evolution_example/Rplot8.png
evolution_example/Rplot9.png
evolution_example/animate.sty
evolution_example/animation.aux
evolution_example/animation.gif
evolution_example/animation.log
evolution_example/animation.mp4
evolution_example/animation.pdf
evolution_example/animation.tex
evolution_example/animfp.sty
evolution_example/css/reset.css
evolution_example/css/scianimator.blue.css
evolution_example/css/scianimator.css
evolution_example/css/scianimator.dark.css
evolution_example/css/scianimator.light.css
evolution_example/css/styles.css
evolution_example/images/Rplot1.png
evolution_example/images/Rplot10.png
evolution_example/images/Rplot11.png
evolution_example/images/Rplot12.png
evolution_example/images/Rplot13.png
evolution_example/images/Rplot14.png
evolution_example/images/Rplot15.png
evolution_example/images/Rplot16.png
evolution_example/images/Rplot17.png
evolution_example/images/Rplot18.png
evolution_example/images/Rplot19.png
evolution_example/images/Rplot2.png
evolution_example/images/Rplot20.png
evolution_example/images/Rplot3.png
evolution_example/images/Rplot4.png
evolution_example/images/Rplot5.png
evolution_example/images/Rplot6.png
evolution_example/images/Rplot7.png
evolution_example/images/Rplot8.png
evolution_example/images/Rplot9.png
evolution_example/index.html
evolution_example/js/Rplot.js
evolution_example/js/jquery-1.4.4.min.js
evolution_example/js/jquery.scianimator.min.js
figure/mergeselection-1.png
figure/plotF-1.png
genlogo.R
inst/CITATION
man/CLL.Rd
man/CascadeFinit.Rd
man/CascadeFshape.Rd
man/IndicFinit.Rd
man/IndicFshape.Rd
man/M.Rd
man/Net.Rd
man/Net_inf_PL.Rd
man/Patterns-package.Rd
man/Selection.Rd
man/analyze_network-omics_network-method.Rd
man/as.omics_array.Rd
man/clustExploration-omics_array-method.Rd
man/clustInference-omics_array-numeric-method.Rd
man/compare-methods.Rd
man/cutoff-omics_network-method.Rd
man/dim.Rd
man/doc.Rd
man/evolution-omics_network-method.Rd
man/figures/Cairo-fa-sitemap.pdf
man/figures/Cairo-fa-sitemap.svg
man/figures/README-Fresults-1.png
man/figures/README-FresultsEN-1.png
man/figures/README-FresultsLC-1.png
man/figures/README-FresultsRobust-1.png
man/figures/README-FresultsSB-1.png
man/figures/README-FresultsSBW-1.png
man/figures/README-FresultsSPLS-1.png
man/figures/README-FresultsStab-1.png
man/figures/README-FresultsStabWeight-1.png
man/figures/README-Fresultslasso2-1.png
man/figures/README-Fresultslasso2Weighted-1.png
man/figures/README-cutoff-1.png
man/figures/README-evolutationpkgdown-1.png
man/figures/README-heatresults-1.png
man/figures/README-heatresultsEN-1.png
man/figures/README-heatresultsLC-1.png
man/figures/README-heatresultsRobust-1.png
man/figures/README-heatresultsSB-1.png
man/figures/README-heatresultsSBW-1.png
man/figures/README-heatresultsSPLS-1.png
man/figures/README-heatresultsStab-1.png
man/figures/README-heatresultsStabWeight-1.png
man/figures/README-heatresultslasso2-1.png
man/figures/README-heatresultslasso2Weighted-1.png
man/figures/README-microselection6-1.png
man/figures/README-microselection6-2.png
man/figures/README-microselection6-3.png
man/figures/README-microselection7-1.png
man/figures/README-microselection7-2.png
man/figures/README-microselection7-3.png
man/figures/README-microselection7-4.png
man/figures/README-microselection7-5.png
man/figures/README-microselection7-6.png
man/figures/README-microselection7-7.png
man/figures/README-microselection7-8.png
man/figures/README-netinfEN-1.png
man/figures/README-netinfEN-2.png
man/figures/README-netinfLC-1.png
man/figures/README-netinfLC-2.png
man/figures/README-netinfRobust-1.png
man/figures/README-netinfRobust-2.png
man/figures/README-netinfSB-1.png
man/figures/README-netinfSB-2.png
man/figures/README-netinfSBW-1.png
man/figures/README-netinfSBW-2.png
man/figures/README-netinfSPLS-1.png
man/figures/README-netinfSPLS-2.png
man/figures/README-netinfStab-1.png
man/figures/README-netinfStab-2.png
man/figures/README-netinfStabWeight-1.png
man/figures/README-netinfStabWeight-2.png
man/figures/README-netinfdefault-1.png
man/figures/README-netinfdefault-2.png
man/figures/README-netinflasso2-1.png
man/figures/README-netinflasso2-2.png
man/figures/README-netinflasso2Weighted-1.png
man/figures/README-netinflasso2Weighted-2.png
man/figures/README-netinflibrary()-1.png
man/figures/README-netinflibrary()-2.png
man/figures/README-omicsselection6-1.png
man/figures/README-omicsselection6-2.png
man/figures/README-omicsselection6-3.png
man/figures/README-omicsselection7-1.png
man/figures/README-omicsselection7-2.png
man/figures/README-omicsselection7-3.png
man/figures/README-omicsselection7-4.png
man/figures/README-omicsselection7-5.png
man/figures/README-omicsselection7-6.png
man/figures/README-omicsselection7-7.png
man/figures/README-omicsselection7-8.png
man/figures/README-plotF-1.png
man/figures/README-plotFpixmap-1.png
man/figures/README-plotfshape1-1.png
man/figures/README-plotfshape2-1.png
man/figures/README-plotfshape3-1.png
man/figures/README-plotmicroarrayclass-1.png
man/figures/README-plotmicroarrayclass-2.png
man/figures/README-plotmicroarrayclass-3.png
man/figures/README-plotmicroarrayclass-4.png
man/figures/README-plotnet-1.png
man/figures/README-plotnet1-1.png
man/figures/README-plotnet2-1.png
man/figures/README-plotomicsarrayclass-1.png
man/figures/README-plotomicsarrayclass-2.png
man/figures/README-plotomicsarrayclass-3.png
man/figures/README-plotomicsarrayclass-4.png
man/figures/README-plotsimuldata-1.png
man/figures/README-plotsimuldata-2.png
man/figures/README-plotsimuldata-3.png
man/figures/README-plotsimuldata-4.png
man/figures/README-plotsimuldata-5.png
man/figures/README-plotsimuldata-6.png
man/figures/README-plotsimuldata-7.png
man/figures/README-summarysimuldata-1.png
man/figures/README-summarysimuldata-2.png
man/figures/README-summarysimuldata-3.png
man/figures/fa-sitemap.svg
man/figures/figure_article_def.png
man/figures/figure_network_pred2.png
man/figures/logo.png
man/figures/logo_Patterns.svg
man/geneNeighborhood-omics_network-method.Rd
man/geneSelection.Rd
man/gene_expr_simulation-omics_network-method.Rd
man/head-omics_array-method.Rd
man/inference.Rd
man/infos.Rd
man/network.Rd
man/network2gp.Rd
man/networkCascade.Rd
man/network_random.Rd
man/omics_array-class.Rd
man/omics_network-class.Rd
man/omics_predict-class.Rd
man/plot-methods.Rd
man/plotF.Rd
man/position-methods.Rd
man/predict-omics_array-method.Rd
man/probeMerge-omics_array-method.Rd
man/replaceBand.Rd
man/replaceDown.Rd
man/replaceUp.Rd
man/show-methods.Rd
man/summary-methods.Rd
man/unionOmics-methods.Rd
man/unsupervised_clustering-omics_array-numeric-numeric-method.Rd
man/unsupervised_clustering_auto_m_c-omics_array-method.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/ExampleCLL.Rmd
vignettes/ExampleCLL_cache/html/HumanTFDB_2a12878eef5fffe2120b54169f7d934d.RData
vignettes/ExampleCLL_cache/html/HumanTFDB_2a12878eef5fffe2120b54169f7d934d.rdb
vignettes/ExampleCLL_cache/html/HumanTFDB_2a12878eef5fffe2120b54169f7d934d.rdx
vignettes/ExampleCLL_cache/html/HumanTFDBfailsafe_12602efe7ac2ce2e8f493545a8ca90de.RData
vignettes/ExampleCLL_cache/html/HumanTFDBfailsafe_12602efe7ac2ce2e8f493545a8ca90de.rdb
vignettes/ExampleCLL_cache/html/HumanTFDBfailsafe_12602efe7ac2ce2e8f493545a8ca90de.rdx
vignettes/ExampleCLL_cache/html/TFinsel_999e6696dbcae9d77fe90d8554aa6951.RData
vignettes/ExampleCLL_cache/html/TFinsel_999e6696dbcae9d77fe90d8554aa6951.rdb
vignettes/ExampleCLL_cache/html/TFinsel_999e6696dbcae9d77fe90d8554aa6951.rdx
vignettes/ExampleCLL_cache/html/__packages
vignettes/ExampleCLL_cache/html/addgeneid_214ad768e45ea3f5b61deb2f0ea0c5af.RData
vignettes/ExampleCLL_cache/html/addgeneid_214ad768e45ea3f5b61deb2f0ea0c5af.rdb
vignettes/ExampleCLL_cache/html/addgeneid_214ad768e45ea3f5b61deb2f0ea0c5af.rdx
vignettes/ExampleCLL_cache/html/checkgroup_ca26f991f5747a1b9d09d092698dcb0c.RData
vignettes/ExampleCLL_cache/html/checkgroup_ca26f991f5747a1b9d09d092698dcb0c.rdb
vignettes/ExampleCLL_cache/html/checkgroup_ca26f991f5747a1b9d09d092698dcb0c.rdx
vignettes/ExampleCLL_cache/html/focusEGR1_64b1205ccb00602185f6d27aec87ee48.RData
vignettes/ExampleCLL_cache/html/focusEGR1_64b1205ccb00602185f6d27aec87ee48.rdb
vignettes/ExampleCLL_cache/html/focusEGR1_64b1205ccb00602185f6d27aec87ee48.rdx
vignettes/ExampleCLL_cache/html/inference_4f5af42280012400becb3b3c5d104abd.RData
vignettes/ExampleCLL_cache/html/inference_4f5af42280012400becb3b3c5d104abd.rdb
vignettes/ExampleCLL_cache/html/inference_4f5af42280012400becb3b3c5d104abd.rdx
vignettes/ExampleCLL_cache/html/retcll_8f48c10656cc59a2c619eb0096f35df0.RData
vignettes/ExampleCLL_cache/html/retcll_8f48c10656cc59a2c619eb0096f35df0.rdb
vignettes/ExampleCLL_cache/html/retcll_8f48c10656cc59a2c619eb0096f35df0.rdx
vignettes/ExampleCLL_cache/html/selection1_e5ecb0749bb8691f5c352860a17ef771.RData
vignettes/ExampleCLL_cache/html/selection1_e5ecb0749bb8691f5c352860a17ef771.rdb
vignettes/ExampleCLL_cache/html/selection1_e5ecb0749bb8691f5c352860a17ef771.rdx
vignettes/ExampleCLL_cache/html/selection2_04cbcd28307329499a768cd3c02b914e.RData
vignettes/ExampleCLL_cache/html/selection2_04cbcd28307329499a768cd3c02b914e.rdb
vignettes/ExampleCLL_cache/html/selection2_04cbcd28307329499a768cd3c02b914e.rdx
vignettes/ExampleCLL_cache/html/selection3_1098718e0dbb6c3f5d2422b04267f25b.RData
vignettes/ExampleCLL_cache/html/selection3_1098718e0dbb6c3f5d2422b04267f25b.rdb
vignettes/ExampleCLL_cache/html/selection3_1098718e0dbb6c3f5d2422b04267f25b.rdx
vignettes/ExampleCLL_cache/html/selection4_6e3126a480577699bf64efcce4172c02.RData
vignettes/ExampleCLL_cache/html/selection4_6e3126a480577699bf64efcce4172c02.rdb
vignettes/ExampleCLL_cache/html/selection4_6e3126a480577699bf64efcce4172c02.rdx
vignettes/ExampleCLL_cache/html/sizemergeselection_c0430bd61f7b9e14f75e4759744c41ad.RData
vignettes/ExampleCLL_cache/html/sizemergeselection_c0430bd61f7b9e14f75e4759744c41ad.rdb
vignettes/ExampleCLL_cache/html/sizemergeselection_c0430bd61f7b9e14f75e4759744c41ad.rdx
vignettes/ExampleCLL_cache/html/spltcll_8535a2e4bf5c48b7c6862ae9330974c4.RData
vignettes/ExampleCLL_cache/html/spltcll_8535a2e4bf5c48b7c6862ae9330974c4.rdb
vignettes/ExampleCLL_cache/html/spltcll_8535a2e4bf5c48b7c6862ae9330974c4.rdx
vignettes/ExampleCLL_cache/html/translatecll_0d9f1664816fc2267d22682685740198.RData
vignettes/ExampleCLL_cache/html/translatecll_0d9f1664816fc2267d22682685740198.rdb
vignettes/ExampleCLL_cache/html/translatecll_0d9f1664816fc2267d22682685740198.rdx
vignettes/ExampleCLL_files/figure-html/addgroupselection-1.png
vignettes/ExampleCLL_files/figure-html/mergeselection-1.png
vignettes/ExampleCLL_files/figure-html/plotF-1.png
vignettes/ExampleCLL_files/figure-html/plotTFinsel-1.png
vignettes/ExampleCLL_files/figure-html/plotTFinsel2-1.png
vignettes/IntroPatterns.Rmd
vignettes/IntroPatterns_cache/html/__packages
vignettes/IntroPatterns_cache/html/analyzenet_66e6982848de65265d4c5470b2ec657e.RData
vignettes/IntroPatterns_cache/html/analyzenet_66e6982848de65265d4c5470b2ec657e.rdb
vignettes/IntroPatterns_cache/html/analyzenet_66e6982848de65265d4c5470b2ec657e.rdx
vignettes/IntroPatterns_cache/html/cutoff_a81d6d5938468bc1fad2b0234fb42c4f.RData
vignettes/IntroPatterns_cache/html/cutoff_a81d6d5938468bc1fad2b0234fb42c4f.rdb
vignettes/IntroPatterns_cache/html/cutoff_a81d6d5938468bc1fad2b0234fb42c4f.rdx
vignettes/IntroPatterns_cache/html/microselection1_0d4b0631f71f90dc425254f471ab9bc9.RData
vignettes/IntroPatterns_cache/html/microselection1_0d4b0631f71f90dc425254f471ab9bc9.rdb
vignettes/IntroPatterns_cache/html/microselection1_0d4b0631f71f90dc425254f471ab9bc9.rdx
vignettes/IntroPatterns_cache/html/microselection2_bae73dacf0f5b981ba1f174e924208e6.RData
vignettes/IntroPatterns_cache/html/microselection2_bae73dacf0f5b981ba1f174e924208e6.rdb
vignettes/IntroPatterns_cache/html/microselection2_bae73dacf0f5b981ba1f174e924208e6.rdx
vignettes/IntroPatterns_cache/html/microselection3_13bee93a4fe2b190c17311fb676bbc42.RData
vignettes/IntroPatterns_cache/html/microselection3_13bee93a4fe2b190c17311fb676bbc42.rdb
vignettes/IntroPatterns_cache/html/microselection3_13bee93a4fe2b190c17311fb676bbc42.rdx
vignettes/IntroPatterns_cache/html/microselection4_4a2fc6d5f76e77ec7b1ac9e410b4a480.RData
vignettes/IntroPatterns_cache/html/microselection4_4a2fc6d5f76e77ec7b1ac9e410b4a480.rdb
vignettes/IntroPatterns_cache/html/microselection4_4a2fc6d5f76e77ec7b1ac9e410b4a480.rdx
vignettes/IntroPatterns_cache/html/netinfEN_1a7e1ec9cb7551e4c2ba8bd2c53cdc95.RData
vignettes/IntroPatterns_cache/html/netinfEN_1a7e1ec9cb7551e4c2ba8bd2c53cdc95.rdb
vignettes/IntroPatterns_cache/html/netinfEN_1a7e1ec9cb7551e4c2ba8bd2c53cdc95.rdx
vignettes/IntroPatterns_cache/html/netinfLC_1ebf2409828b34b54e7aa33a02123f2f.RData
vignettes/IntroPatterns_cache/html/netinfLC_1ebf2409828b34b54e7aa33a02123f2f.rdb
vignettes/IntroPatterns_cache/html/netinfLC_1ebf2409828b34b54e7aa33a02123f2f.rdx
vignettes/IntroPatterns_cache/html/netinfRobust_8789291316bb03d8f5db04cdcc111fac.RData
vignettes/IntroPatterns_cache/html/netinfRobust_8789291316bb03d8f5db04cdcc111fac.rdb
vignettes/IntroPatterns_cache/html/netinfRobust_8789291316bb03d8f5db04cdcc111fac.rdx
vignettes/IntroPatterns_cache/html/netinfSBW_4f6cda1a405b26e4d6818a78f050c828.RData
vignettes/IntroPatterns_cache/html/netinfSBW_4f6cda1a405b26e4d6818a78f050c828.rdb
vignettes/IntroPatterns_cache/html/netinfSBW_4f6cda1a405b26e4d6818a78f050c828.rdx
vignettes/IntroPatterns_cache/html/netinfSB_b9a6049a7c3dd12a5d69995389e87516.RData
vignettes/IntroPatterns_cache/html/netinfSB_b9a6049a7c3dd12a5d69995389e87516.rdb
vignettes/IntroPatterns_cache/html/netinfSB_b9a6049a7c3dd12a5d69995389e87516.rdx
vignettes/IntroPatterns_cache/html/netinfSPLS_e4e32b69ef9a9706540c747a5c0b0da9.RData
vignettes/IntroPatterns_cache/html/netinfSPLS_e4e32b69ef9a9706540c747a5c0b0da9.rdb
vignettes/IntroPatterns_cache/html/netinfSPLS_e4e32b69ef9a9706540c747a5c0b0da9.rdx
vignettes/IntroPatterns_cache/html/netinfStabWeight_78954f327533a8bbc68436fde7a102c3.RData
vignettes/IntroPatterns_cache/html/netinfStabWeight_78954f327533a8bbc68436fde7a102c3.rdb
vignettes/IntroPatterns_cache/html/netinfStabWeight_78954f327533a8bbc68436fde7a102c3.rdx
vignettes/IntroPatterns_cache/html/netinfStab_6adef2894643ba93cb28d3efe9242619.RData
vignettes/IntroPatterns_cache/html/netinfStab_6adef2894643ba93cb28d3efe9242619.rdb
vignettes/IntroPatterns_cache/html/netinfStab_6adef2894643ba93cb28d3efe9242619.rdx
vignettes/IntroPatterns_cache/html/netinfdefault_f37a28347a843d8850df552a1fd20da4.RData
vignettes/IntroPatterns_cache/html/netinfdefault_f37a28347a843d8850df552a1fd20da4.rdb
vignettes/IntroPatterns_cache/html/netinfdefault_f37a28347a843d8850df552a1fd20da4.rdx
vignettes/IntroPatterns_cache/html/netinflasso2Weighted_8223bc3be97de9a6511f785af6bad036.RData
vignettes/IntroPatterns_cache/html/netinflasso2Weighted_8223bc3be97de9a6511f785af6bad036.rdb
vignettes/IntroPatterns_cache/html/netinflasso2Weighted_8223bc3be97de9a6511f785af6bad036.rdx
vignettes/IntroPatterns_cache/html/netinflasso2_84bca7c9b2dc7dbfe466cb904269b028.RData
vignettes/IntroPatterns_cache/html/netinflasso2_84bca7c9b2dc7dbfe466cb904269b028.rdb
vignettes/IntroPatterns_cache/html/netinflasso2_84bca7c9b2dc7dbfe466cb904269b028.rdx
vignettes/IntroPatterns_cache/html/omicsselection1_96ae94020273969ad0574460463148c9.RData
vignettes/IntroPatterns_cache/html/omicsselection1_96ae94020273969ad0574460463148c9.rdb
vignettes/IntroPatterns_cache/html/omicsselection1_96ae94020273969ad0574460463148c9.rdx
vignettes/IntroPatterns_cache/html/omicsselection2_e6931cfb58aa8ea47053f38a20f5a55f.RData
vignettes/IntroPatterns_cache/html/omicsselection2_e6931cfb58aa8ea47053f38a20f5a55f.rdb
vignettes/IntroPatterns_cache/html/omicsselection2_e6931cfb58aa8ea47053f38a20f5a55f.rdx
vignettes/IntroPatterns_cache/html/omicsselection3_955bd4cb05616682974ba13d680897dc.RData
vignettes/IntroPatterns_cache/html/omicsselection3_955bd4cb05616682974ba13d680897dc.rdb
vignettes/IntroPatterns_cache/html/omicsselection3_955bd4cb05616682974ba13d680897dc.rdx
vignettes/IntroPatterns_cache/html/omicsselection4_ebf0619cd2fe355ae365cb9db2d25e9b.RData
vignettes/IntroPatterns_cache/html/omicsselection4_ebf0619cd2fe355ae365cb9db2d25e9b.rdb
vignettes/IntroPatterns_cache/html/omicsselection4_ebf0619cd2fe355ae365cb9db2d25e9b.rdx
vignettes/IntroPatterns_cache/html/plotsimuldata_eabe9e32e32cd9151e34cb5d0e94f44f.RData
vignettes/IntroPatterns_cache/html/plotsimuldata_eabe9e32e32cd9151e34cb5d0e94f44f.rdb
vignettes/IntroPatterns_cache/html/plotsimuldata_eabe9e32e32cd9151e34cb5d0e94f44f.rdx
vignettes/IntroPatterns_cache/html/summarysimuldata_7c8d88317de9be785f1a462e163c383a.RData
vignettes/IntroPatterns_cache/html/summarysimuldata_7c8d88317de9be785f1a462e163c383a.rdb
vignettes/IntroPatterns_cache/html/summarysimuldata_7c8d88317de9be785f1a462e163c383a.rdx
vignettes/IntroPatterns_files/figure-html/Fresults-1.png
vignettes/IntroPatterns_files/figure-html/FresultsLC-1.png
vignettes/IntroPatterns_files/figure-html/compare-1.png
vignettes/IntroPatterns_files/figure-html/heatresults-1.png
vignettes/IntroPatterns_files/figure-html/plotF-1.png
vignettes/IntroPatterns_files/figure-html/plotFpixmap-1.png
vignettes/IntroPatterns_files/figure-html/plotfshape1-1.png
vignettes/IntroPatterns_files/figure-html/plotmicroarrayclass-1.png
vignettes/IntroPatterns_files/figure-html/plotmicroarrayclass-2.png
vignettes/IntroPatterns_files/figure-html/plotmicroarrayclass-3.png
vignettes/IntroPatterns_files/figure-html/plotmicroarrayclass-4.png
vignettes/IntroPatterns_files/figure-html/plotnet-1.png
vignettes/IntroPatterns_files/figure-html/plotnet1-1.png
vignettes/IntroPatterns_files/figure-html/plotnet2-1.png
vignettes/forgotten_TF.pdf
