calc_pvalue: Calculate a p-value from a permutation test
In fboehm/qtl2effects: Tools for Allele Effects at Established Quantitative Trait Loci
Description
Usage
Arguments
Details
Value
Description
Calculate a p-value from a permutation test
Usage
1
calc_pvalue(observed_lod, maxlods)
Arguments
observed_lod
the test statistic, on the lod scale
maxlods
a vector of max lods from a collection of permutations
Details
If the observed_lod is greater than all values in the vector maxlods, then a p-value of zero is returned. In practice, it means that you need more permutations.
Value
a permutation test p-value
fboehm/qtl2effects documentation built on Sept. 20, 2021, 7:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
Calculate a p-value from a permutation test
Usage
1 | calc_pvalue(observed_lod, maxlods)
|
Arguments
observed_lod |
the test statistic, on the lod scale |
maxlods |
a vector of max lods from a collection of permutations |
Details
If the observed_lod is greater than all values in the vector maxlods, then a p-value of zero is returned. In practice, it means that you need more permutations.
Value
a permutation test p-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.