Files in fboehm/qtl2pleio
Testing Pleiotropy in Multiparental Populations
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pr-commands.yaml
.gitignore
.zenodo.json
CONDUCT.md
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/boot_pvl.R
R/calc_Bhat.R
R/calc_Sigma.R
R/calc_covs.R
R/calc_lrt_tib.R
R/calc_profile_lods.R
R/calc_sqrt_mat.R
R/convert_to_scan1_output.R
R/find_pleio_peak_tib.R
R/fit1_pvl.R
R/get_effects.R
R/plot_pvl.R
R/prep_mytab.R
R/process_inputs.R
R/qtl2pleio-package.r
R/rcpp_calc_Bhat.R
R/rcpp_log_dmvnorm2.R
R/scan_multi_onechr.R
R/scan_pvl.R
R/sim1.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
codemeta.json
cran-comments.md
inst/CITATION
man/add_pmap.Rd
man/boot_pvl.Rd
man/calc_Bhat.Rd
man/calc_Sigma.Rd
man/calc_covs.Rd
man/calc_invsqrt_mat.Rd
man/calc_lrt_tib.Rd
man/calc_profile_lods.Rd
man/calc_sqrt_mat.Rd
man/check_identical.Rd
man/check_missingness.Rd
man/convert_to_scan1_output.Rd
man/figures/README-1d-lod-plots-1.png
man/figures/README-profile-plot-1.png
man/find_pleio_peak_tib.Rd
man/fit1_pvl.Rd
man/get_effects.Rd
man/make_id2keep.Rd
man/pipe.Rd
man/plot_pvl.Rd
man/prep_X_list.Rd
man/prep_mytab.Rd
man/process_inputs.Rd
man/qtl2pleio.Rd
man/rcpp_calc_Bhat.Rd
man/rcpp_calc_Bhat2.Rd
man/rcpp_log_dmvnorm2.Rd
man/scan_multi_onechr.Rd
man/scan_multi_oneqtl.Rd
man/scan_multi_oneqtl_perm.Rd
man/scan_pvl.Rd
man/sim1.Rd
man/subset_input.Rd
man/subset_kinship.Rd
paper.bib
paper.md
qtl2pleio.Rproj
src/.gitignore
src/RcppExports.cpp
src/eigen_sqrt.cpp
src/matrix.cpp
src/matrix.h
src/rcpp_ols.cpp
src/rcppeigen.cpp
tests/testthat.R
tests/testthat/test-boot_pvl.R
tests/testthat/test-calc_Bhat.R
tests/testthat/test-calc_covs.R
tests/testthat/test-calc_lrt_tib.R
tests/testthat/test-drop_depcols.R
tests/testthat/test-find_pleio_peak_tib.R
tests/testthat/test-make_id2keep.R
tests/testthat/test-prep_mytab.R
tests/testthat/test-rcpp_calc_Bhat.R
tests/testthat/test-rcpp_calc_Bhat2.R
tests/testthat/test-rcpp_log_dmvnorm2.R
tests/testthat/test-scan_pvl.R
tests/testthat/test-sim1.R
tests/testthat/test-subset_input.R
vignettes/.gitignore
vignettes/d-variate-analysis.Rmd
vignettes/multivariate-one-QTL-scans.Rmd
vignettes/qtl2pleio.bib
vignettes/recla-analysis.Rmd
