Files in fboehm/qtl2pleio
Hypothesis test of close linkage vs pleiotropy in multiparental populations

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/boot_pvl.R R/calc_Bhat.R R/calc_Sigma.R R/calc_covs.R R/calc_lrt_tib.R R/calc_sqrt_mat.R R/check_dimnames.R R/find_pleio_peak_tib.R R/plot_pvl.R R/prep_mytab.R R/qtl2pleio-package.r R/rcpp_calc_Bhat.R R/rcpp_log_dmvnorm2.R R/scan_pvl.R R/sim1.R R/sim400.R R/tidy_scan_pvl.R R/utils.R README.Rmd README.md
_pkgdown.yml
codecov.yml
docs/LICENSE-text.html
docs/articles/Comparing_limmbo2_covariance_estimates_with_those_of_gemma2.html
docs/articles/benchmarking.html
docs/articles/index.html
docs/articles/testing-pleiotropy-vs-separate-qtl.html
docs/articles/testing-pleiotropy-vs-separate-qtl_files/figure-html/unnamed-chunk-12-1.png
docs/articles/testing-pleiotropy-vs-separate-qtl_files/figure-html/unnamed-chunk-13-1.png
docs/articles/testing-pleiotropy-vs-separate-qtl_files/figure-html/unnamed-chunk-16-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/add_intercepts.html
docs/reference/add_pmap.html
docs/reference/arrange_by_rownames.html
docs/reference/assemble_profile_tib.html
docs/reference/boot_pvl.html
docs/reference/calc_Bhat.html
docs/reference/calc_Sigma.html
docs/reference/calc_covs.html
docs/reference/calc_invsqrt_mat.html
docs/reference/calc_lrt_tib.html
docs/reference/calc_sqrt_mat.html
docs/reference/check_dimnames.html
docs/reference/check_identical.html
docs/reference/find_pleio_peak_tib.html
docs/reference/index.html
docs/reference/make_id2keep.html
docs/reference/plot_pvl.html
docs/reference/prep_X_list.html
docs/reference/prep_mytab.html
docs/reference/qtl2pleio.html
docs/reference/rcpp_calc_Bhat.html
docs/reference/rcpp_calc_Bhat2.html
docs/reference/rcpp_log_dmvnorm2.html
docs/reference/scan_pvl.html
docs/reference/sim1.html
docs/reference/sim400.html
docs/reference/subset_input.html
docs/reference/subset_kinship.html
docs/reference/tidy_scan_pvl.html
docs/reference/transform_loglik_mat.html
man/add_intercepts.Rd man/add_pmap.Rd man/arrange_by_rownames.Rd man/assemble_profile_tib.Rd man/boot_pvl.Rd man/calc_Bhat.Rd man/calc_Sigma.Rd man/calc_covs.Rd man/calc_invsqrt_mat.Rd man/calc_lrt_tib.Rd man/calc_sqrt_mat.Rd man/check_dimnames.Rd man/check_identical.Rd man/find_pleio_peak_tib.Rd man/make_id2keep.Rd man/plot_pvl.Rd man/prep_X_list.Rd man/prep_mytab.Rd man/qtl2pleio.Rd man/rcpp_calc_Bhat.Rd man/rcpp_calc_Bhat2.Rd man/rcpp_log_dmvnorm2.Rd man/scan_pvl.Rd man/sim1.Rd man/sim400.Rd man/subset_input.Rd man/subset_kinship.Rd man/tidy_scan_pvl.Rd man/transform_loglik_mat.Rd
qtl2pleio.Rproj
src/.gitignore
src/RcppExports.cpp
src/eigen_sqrt.cpp
src/rcpp_ols.cpp
src/rcppeigen.cpp
tests/testthat.R
tests/testthat/test-add_pmap.R
tests/testthat/test-arrange_by_rownames.R tests/testthat/test-calc_Bhat.R tests/testthat/test-calc_covs.R tests/testthat/test-check_dimnames.R tests/testthat/test-prep_mytab.R tests/testthat/test-rcpp_calc_Bhat.R tests/testthat/test-rcpp_calc_Bhat2.R tests/testthat/test-rcpp_log_dmvnorm2.R tests/testthat/test-scan_pvl.R tests/testthat/test-sim1.R tests/testthat/test-subset_input.R tests/testthat/test-tibble-builders.R tests/testthat/test-tidy_scan_pvl.R
vignettes/.gitignore
vignettes/Comparing_limmbo2_covariance_estimates_with_those_of_gemma2.Rmd vignettes/benchmarking.Rmd vignettes/testing-pleiotropy-vs-separate-qtl.Rmd
fboehm/qtl2pleio documentation built on Oct. 16, 2018, 9:14 p.m.