prep_X_list: Create a list of component X matrices for input to...

In fboehm/qtl2pleio: Testing Pleiotropy in Multiparental Populations

Description

Create a list of component X matrices for input to stagger_mats, to ultimately create design matrix

Usage

prep_X_list(indices, start_snp, probs, covariates)

Arguments

indices	a vector of integers
start_snp	an integer denoting the index (within genotype probabilities array) where the scan should start
probs	a three-dimensional array of genotype probabilities for a single chromosome
covariates	a matrix of covariates

Value

a list of design matrices, ultimately useful when constructing the (multi-locus) design matrix

Examples

pp <- array(rbinom(n = 200, size = 1, prob = 0.5), dim = c(10, 2, 10))
prep_X_list(1:3, 1, probs = pp, covariates = NULL)

fboehm/qtl2pleio documentation built on July 17, 2021, 11:34 p.m.